View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_low_14 (Length: 457)
Name: NF8349_low_14
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 185 - 444
Target Start/End: Original strand, 35899004 - 35899263
Alignment:
| Q |
185 |
cagcatagatatgaagaacttaaatccaaaggctgtaacatgattggcatgtattccttattatcactgtgcattatgatgtgaaatagcaatatcgaaa |
284 |
Q |
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| T |
35899004 |
cagcatagatatgaagaacttaaatccaaaggctgtaacatgattggtatgtattccttattatcactgtgcattatgatgtgaaatagcaatatcgaaa |
35899103 |
T |
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| Q |
285 |
caattgtgttatgtgtagtatacacacgaacactggacacaacactatacaaatatgcagacacaaattataaaatcgaacacgacattgataccattaa |
384 |
Q |
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| T |
35899104 |
caattgtgttatgtgtagtatacacacgaacactggacacaacactatacaaatatgcagacacaaattataaaattgaacacgacattgataccattaa |
35899203 |
T |
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| Q |
385 |
taatttgagagaaaatgaaataattgaatcatctttcggacaacatacaatgtctctgct |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
35899204 |
taatttgagagaaaatgaaataattgaatcatctttcggacaccatacaatgtctgtgct |
35899263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 35898836 - 35898967
Alignment:
| Q |
16 |
gatccttcccacaactctgaaaacgattttcatatcatttcttgccgtaatcatgtacgtaattgtaatttcaattttccatttcaaatttcttgcgcat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35898836 |
gatccttcccacaactctgaaaacgattttcatatcatttcttgccgtaatcatgtacgtaattgtaatttcaattttccatttcaaatttcttacgcat |
35898935 |
T |
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| Q |
116 |
gatcatcaatatcactctccgataggatatga |
147 |
Q |
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| T |
35898936 |
gatcatcaatatcactctccgataggatatga |
35898967 |
T |
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