View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_low_15 (Length: 453)
Name: NF8349_low_15
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 5066692 - 5066898
Alignment:
| Q |
1 |
aaaaaacaacaaaacattcttgattaaaccatctttcttaactatgatgaggaagggacagaaccaaaacatgtttgtaaggatcatgtgttcaccaata |
100 |
Q |
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| T |
5066692 |
aaaaaacaacaaaacattcttgattaaaccatctttcttaactatgatgaggaagggacagaaccaaaacatgtttgtaaggatcatgtgttcaccaata |
5066791 |
T |
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| Q |
101 |
agagcactaggaaaagcaagagatgcatacgtaagaagcataacaaactgtggtcaaaatatgagttatggtagttatccaatggatggtgctagtaaat |
200 |
Q |
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| T |
5066792 |
agagcactaggaaaagcaagagatgcatatgtaagaagcataacaaactgtggtcaaaatatgagttatggtagttatccaatggatggtgctagtaaat |
5066891 |
T |
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| Q |
201 |
tttcttt |
207 |
Q |
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||||||| |
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| T |
5066892 |
tttcttt |
5066898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 270 - 437
Target Start/End: Original strand, 5066946 - 5067113
Alignment:
| Q |
270 |
tagagggtaatgaagattttgccgagcttgttagagctgcttctgctagaactttaggtaatagaattgatgtggatttagttctcaagcagcaacatca |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5066946 |
tagagggtaatgaagattttgccgagcttgttagagctgcttctgctagaactttaggtaatagaattgatgtggatttagttctcaagcagcaacatca |
5067045 |
T |
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| Q |
370 |
acaacaacaacagaaattgcataaagggttacctaagtctagtagtgttggaatggctaagattgatg |
437 |
Q |
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| T |
5067046 |
acaacaacaacagaaattgcataaagggttacctaagtctagtagtgttggaatggctaagattgatg |
5067113 |
T |
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