View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8349_low_18 (Length: 430)
Name: NF8349_low_18
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_18 |
 | |
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| [»] scaffold0020 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 17 - 402
Target Start/End: Complemental strand, 51458674 - 51458289
Alignment:
| Q |
17 |
agagaaagtaaatggtcatgaggggcatccctataactagataatggaaaattgtctaagccggttctacctgctttaaaggaatgcaattgacatgtct |
116 |
Q |
| |
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|||||| ||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51458674 |
agagaaggtaaatggtcatgaggggcatccatagagctagataatggaaaattgtctaagccggttctacctgctttaaaggaatgcaattgacatgtct |
51458575 |
T |
|
| Q |
117 |
gaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcccagagagcaccttctaagggatcctctccaacc |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51458574 |
gaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcccagagagcaccttctaagggatcctctccaacc |
51458475 |
T |
|
| Q |
217 |
atcaggtcatcatcattagtgtcaaagagttggtgaaacatatcaaccgcctccccatcatcatgtagctccctcttatcttgctcaaggtgcttacgcg |
316 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
51458474 |
atcaggtcatcatcattagtgtcagagagttggtgaaacatatcaaccgcctccccatcaccatgtagctccctcttatcttgctcaaggtgcttacgcg |
51458375 |
T |
|
| Q |
317 |
tcaatttcttaatgacactaatttcctcaggttttagttccactttagcgatatgagtcaacacatttaccttatagccaaattac |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51458374 |
tcaatttcttaatgacactaatttcctcaggttttagttccactttagcgatatgagtcaacacatttaccttatagccaaattac |
51458289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 84 - 202
Target Start/End: Original strand, 30204068 - 30204186
Alignment:
| Q |
84 |
tacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcc |
183 |
Q |
| |
|
|||||||||||||||| ||||| |||||| |||||||||||||||||||||| || |||||| | |||||| ||||||||||||||||||||||||||| |
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| T |
30204068 |
tacctgctttaaaggagagcaatagacatgcctgaactctctgaaatgcttctttaaatattcttccaatttaggtacatcctctctccgaaaaatatcc |
30204167 |
T |
|
| Q |
184 |
cagagagcaccttctaagg |
202 |
Q |
| |
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||||||||||| ||||||| |
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| T |
30204168 |
cagagagcaccatctaagg |
30204186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 84 - 200
Target Start/End: Complemental strand, 51483175 - 51483059
Alignment:
| Q |
84 |
tacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcc |
183 |
Q |
| |
|
|||||||||||||||| ||||| |||||| ||||||||| |||||||||||| || |||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
51483175 |
tacctgctttaaaggagagcaatggacatgcctgaactctttgaaatgcttctttaaatattcctccaattcaggtacatcctctctccgaaaaatatcc |
51483076 |
T |
|
| Q |
184 |
cagagagcaccttctaa |
200 |
Q |
| |
|
|| |||||||| ||||| |
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| T |
51483075 |
caaagagcaccatctaa |
51483059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 84 - 200
Target Start/End: Complemental strand, 51500012 - 51499896
Alignment:
| Q |
84 |
tacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcc |
183 |
Q |
| |
|
|||||||||||||||| | | | |||||| |||||||||||||||||||||| || |||||||| ||| || || |||||||||||||||||||||||| |
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| T |
51500012 |
tacctgctttaaaggagaggagtggacatgcctgaactctctgaaatgcttctttaaatattcctccaacttaggaacatcctctctccgaaaaatatcc |
51499913 |
T |
|
| Q |
184 |
cagagagcaccttctaa |
200 |
Q |
| |
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||||||||||| ||||| |
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| T |
51499912 |
cagagagcaccgtctaa |
51499896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 273 - 388
Target Start/End: Complemental strand, 51482950 - 51482835
Alignment:
| Q |
273 |
atcatcatgtagctccctcttatcttgctcaaggtgcttacgcgtcaatttcttaatgacactaatttcctcaggttttagttccactttagcgatatga |
372 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||| | |||| ||||| |||| || ||| |||||| ||| | || ||||| ||| |||||| |
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| T |
51482950 |
atcaccatgtagctccctcttgtcttgctcaaggtgcttttgtgtcagtttctcaatggcagcaatgccctcagatttcaatttcacttcagcaatatga |
51482851 |
T |
|
| Q |
373 |
gtcaacacatttacct |
388 |
Q |
| |
|
|||||||||||||||| |
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| T |
51482850 |
gtcaacacatttacct |
51482835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 51499790 - 51499733
Alignment:
| Q |
273 |
atcatcatgtagctccctcttatcttgctcaaggtgcttacgcgtcaatttcttaatg |
330 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
51499790 |
atcaccatgtagctccctcttgtcttgctcaaggtgcttttctgtcaatttcttaatg |
51499733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 402
Target Start/End: Complemental strand, 43162947 - 43162559
Alignment:
| Q |
14 |
agcagagaaagtaaatggtcatgaggggcatccctataactagataatggaaaattgtctaagccggttctacctgctttaaaggaatgcaattgacatg |
113 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||| || | ||||||||||||||||||||||||| | || |||||||||||||||| ||||||||||||| |
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| T |
43162947 |
agcagagaaagtaaatgatcacgaggggcatccatagagctagataatggaaaattgtctaagctgattttacctgctttaaaggactgcaattgacatg |
43162848 |
T |
|
| Q |
114 |
tctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcccagagagcaccttctaagggatcctctcca |
213 |
Q |
| |
|
||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
43162847 |
tctgaactctctgaaatgcttttttatatattccttcaatttgggtacatcctctctccgaaaaatatcccagagagcaccttctaaggggtcccctcca |
43162748 |
T |
|
| Q |
214 |
accatcaggtcatcatcattagtgtcaaagagttggtgaaacatatcaaccgcctccccatcatcatgtagctccctcttatcttgctcaaggtgcttac |
313 |
Q |
| |
|
|||| || |||| |||||||||||| || || | ||||| || |||||| |||| | |||| ||| || |||||||||||||||||||||||||| |
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|
| T |
43162747 |
accaccaagtcactatcattagtgtcggagtgtcgatgaaatatttcaaccacctctcgatcaccataaaggtccctcttatcttgctcaaggtgcttct |
43162648 |
T |
|
| Q |
314 |
gcgtcaatttcttaatgacactaatttcctcaggttttagttccactttagcgatatgagtcaacacatttaccttatagccaaattac |
402 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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|
| T |
43162647 |
gtctcaatttcttaatgacattaatttcctcaggtttcagttccactttagcgatatgcgtcaacacatttaccttatagtcaaattac |
43162559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 84 - 204
Target Start/End: Complemental strand, 27398647 - 27398527
Alignment:
| Q |
84 |
tacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcc |
183 |
Q |
| |
|
||||| || ||||||| ||||| |||||| |||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||| |
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|
| T |
27398647 |
tacctcctctaaaggagagcaatggacatgcctgaactctctgaaatgcttcttcagatattcctgcaatgcaggtacatcctctctccgaaaaatatcc |
27398548 |
T |
|
| Q |
184 |
cagagagcaccttctaaggga |
204 |
Q |
| |
|
|| |||||||| ||||||||| |
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|
| T |
27398547 |
caaagagcaccatctaaggga |
27398527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 84 - 200
Target Start/End: Original strand, 20866760 - 20866876
Alignment:
| Q |
84 |
tacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcc |
183 |
Q |
| |
|
|||||||||||||||| |||| || ||| |||||||||| ||||||||| ||||||||||||||||| || |||||||||||||||||||||||| |
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|
| T |
20866760 |
tacctgctttaaaggagaacaatagatatgcctgaactctccagaatgcttcttcagatattccttcaatttcggcacatcctctctccgaaaaatatcc |
20866859 |
T |
|
| Q |
184 |
cagagagcaccttctaa |
200 |
Q |
| |
|
||| ||||||| ||||| |
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|
| T |
20866860 |
cagtgagcaccatctaa |
20866876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 388
Target Start/End: Original strand, 20867027 - 20867142
Alignment:
| Q |
273 |
atcatcatgtagctccctcttatcttgctcaaggtgcttacgcgtcaatttcttaatgacactaatttcctcaggttttagttccactttagcgatatga |
372 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||| || ||||| ||||| || |||| | ||| || |||||||||||||| | |||| |
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|
| T |
20867027 |
atcaccatgtagctccctcttgtcttgctcaaggtgcttttctgttaattttttaattgcagtaatgctcacagtttccagttccactttagcaacatga |
20867126 |
T |
|
| Q |
373 |
gtcaacacatttacct |
388 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
20867127 |
gtcaacacatttacct |
20867142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 27398476 - 27398420
Alignment:
| Q |
273 |
atcatcatgtagctccctcttatcttgctcaaggtgcttacgcgtcaatttcttaat |
329 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||| | ||||||||||||| |
|
|
| T |
27398476 |
atcaccatgtagctccctcttgtcttgctcaaggtgcttttgtttcaatttcttaat |
27398420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 84 - 200
Target Start/End: Original strand, 135504 - 135620
Alignment:
| Q |
84 |
tacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcc |
183 |
Q |
| |
|
|||||||||||||||| ||||| || ||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
135504 |
tacctgctttaaaggagagcaatagatatgcctgaactctctgaaatgcttcatcagatattccttcaatttaggtacatcctctctccgaaaaatatcc |
135603 |
T |
|
| Q |
184 |
cagagagcaccttctaa |
200 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
135604 |
cagagagcaccatctaa |
135620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 281 - 388
Target Start/End: Original strand, 135782 - 135888
Alignment:
| Q |
281 |
gtagctccctcttatcttgctcaaggtgcttacgcgtcaatttcttaatgacactaatttcctcaggttttagttccactttagcgatatgagtcaacac |
380 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | |||||||||||||| || |||| ||||| || |||||||| ||||| |||||||||||||| |
|
|
| T |
135782 |
gtagctccctcttgtcttgctcaaggtgcttttgtgtcaatttcttaattgcagtaatactctcagtttccagttccac-ttagcaatatgagtcaacac |
135880 |
T |
|
| Q |
381 |
atttacct |
388 |
Q |
| |
|
|||||||| |
|
|
| T |
135881 |
atttacct |
135888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 36549861 - 36549804
Alignment:
| Q |
273 |
atcatcatgtagctccctcttatcttgctcaaggtgcttacgcgtcaatttcttaatg |
330 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
36549861 |
atcaccatgtagcaccctcttatcttgctcaaggtgcttttgtatcaatttcttaatg |
36549804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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