View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_low_20 (Length: 417)
Name: NF8349_low_20
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 34440791 - 34440571
Alignment:
| Q |
1 |
tttgaagttgtgagttgataaaagttgctccatttgactctttaaacagaacctgcgtccaatagctaggagttccatacgattgatcgctgtcaaagac |
100 |
Q |
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| T |
34440791 |
tttgaagttgtgagttgataaaagttgctccatttgactctttaaacagaacctgcgtccaatagctaggagttccatacgattgatcgctgtcaaagac |
34440692 |
T |
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| Q |
101 |
aattgcatctgggctccaactacaaaaattgcacatctcaatgttatcatcatgcaataatagtttatcttaaatcttattcatgcagttccccttagca |
200 |
Q |
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| T |
34440691 |
aattgcatctgggctccaactacaaaaattgcacatctcaatgttatcatcatgcaataatagtttatcttaaatcttattcatgcagttccccttagca |
34440592 |
T |
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| Q |
201 |
tgttcatacttaggggtaggt |
221 |
Q |
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| T |
34440591 |
tgttcatacttaggggtaggt |
34440571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 272 - 400
Target Start/End: Complemental strand, 34440520 - 34440392
Alignment:
| Q |
272 |
ctgaatcatactgctatattcagttactttatgaatggaacatgacagttaaaaggaaatagaaagacatactttctatcatttgcatttaccaaaagtg |
371 |
Q |
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| T |
34440520 |
ctgaatcatactcctatattcagttactttatgaatggaacatgacagttaaaaggaaatagaaagacatactttctatcatttgcatttaccaaaagtg |
34440421 |
T |
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| Q |
372 |
gtgcataagaagccattgcaacatgatca |
400 |
Q |
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| T |
34440420 |
gtgcataagaagccattgcaacatgatca |
34440392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 323 - 400
Target Start/End: Complemental strand, 34466637 - 34466560
Alignment:
| Q |
323 |
aaaggaaatagaaagacatactttctatcatttgcatttaccaaaagtggtgcataagaagccattgcaacatgatca |
400 |
Q |
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| T |
34466637 |
aaaggaaatagaaagacatactttctgtcatttgcatttaccaaaagtggtgcataagaagccattgcaacatgatca |
34466560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 34450758 - 34450599
Alignment:
| Q |
1 |
tttgaagttgtgagttgataaaagttgctccatttgactctttaaacagaacctgcgtccaatagctaggagttccatacgattgatcgctgtcaaagac |
100 |
Q |
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|||||||| |||||||| ||| ||||||||||||||||||||||||||| | ||||||||||||||| ||||| ||||| |||| |||||| |
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| T |
34450758 |
tttgaagtgttgagttgagaaatgttgctccatttgactctttaaacagatatgtcacccaatagctaggagtcccataaacttgattgctgctaaagac |
34450659 |
T |
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| Q |
101 |
aattgcatctgggctccaactacaaaaattgcacatctcaatgttatcatcatgcaataa |
160 |
Q |
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| T |
34450658 |
aattgcatctggattccatctacaaaaattgcacatctcaatgttatcattatgcaataa |
34450599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 34466834 - 34466674
Alignment:
| Q |
1 |
tttgaagttgtgagttgataaaagttgctccatttgactctttaaacagaacctgcgtccaatagctaggagttccatacgattgatcgctgtcaaagac |
100 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||||| | | ||||||||||||||| ||||| | ||||| ||||| ||| || |
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| T |
34466834 |
tttgaagttgtgagttgagaaatgttgctccatttgactctttaaacatatatgtcacccaatagctaggagtcccataagcttgatagctgttaaaaac |
34466735 |
T |
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| Q |
101 |
aattgcatctgggctccaactaca--aaaattgcacatctcaatgttatcatcatgcaataa |
160 |
Q |
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|||||||||||| |||||||||| |||| |||||||||| ||||| |||||||||||||| |
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| T |
34466734 |
aattgcatctggattccaactacaaaaaaaatgcacatctc-atgttgtcatcatgcaataa |
34466674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 315 - 400
Target Start/End: Complemental strand, 34450564 - 34450479
Alignment:
| Q |
315 |
gacagttaaaaggaaatagaaagacatactttctatcatttgcatttaccaaaagtggtgcataagaagccattgcaacatgatca |
400 |
Q |
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|||| |||| ||||||| ||||||||||| ||| ||||| || ||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
34450564 |
gacacttaagaggaaattgaaagacatacactctgtcattcgcgtttacaaaaagtggtgcataagcagccattgcaacatgatca |
34450479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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