View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8349_low_21 (Length: 413)
Name: NF8349_low_21
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 20 - 400
Target Start/End: Original strand, 8973283 - 8973663
Alignment:
| Q |
20 |
tgaaacttcacacaacacactcaccacaattccttggccttaattcatacaaaggggcatggccagcttctgattatggcaaagatgtcattgttggtat |
119 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8973283 |
tgaagcttgacacaactcactcaccacaattccttggccttaattcatacaaaggggcatggccagcttctgattatggcaaagatgtcattgttggtat |
8973382 |
T |
|
| Q |
120 |
gattgataccggtgtttggccagaaagtgaaagtttcaaagataatgacatgcctcaaattccttcaaaatggaaagggcaattatgtcaatttgaaaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8973383 |
gattgataccggtgtttggccagaaagtgaaagtttcaaagataatgacatgcctcaaattccttcaaaatggaaagggcaattatgtcaatttgaaaat |
8973482 |
T |
|
| Q |
220 |
accaacaattcatctttttgcaacaagaaactcattggagctagattcttcaacaaagggtttttggcaaaatatccaaatctaactaacacaattttga |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8973483 |
accaacaattcatctttttgcaacaagaaactcattggagctagattcttcaacaaagggtttttggcaaaatatccaaatctaactaacacaattttga |
8973582 |
T |
|
| Q |
320 |
actccacacgtgacacaaatggtcatgggacacacacttcaacaacagcagctgggaatcaagttgatggtgcatcattct |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8973583 |
actccacacgtgacacaaatggtcatgggacacacacttcaacaacagcagctgggaatcaagttgatggtgcatcattct |
8973663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 400
Target Start/End: Original strand, 8961881 - 8962261
Alignment:
| Q |
20 |
tgaaacttcacacaacacactcaccacaattccttggccttaattcatacaaaggggcatggccagcttctgattatggcaaagatgtcattgttggtat |
119 |
Q |
| |
|
|||| ||| |||||||| ||||||| ||||||||||| |||||| | |||||||||| |||| ||||||||||||||| |||||||||||||||||| | |
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| T |
8961881 |
tgaagcttgacacaacatactcacctcaattccttggtcttaatccctacaaaggggtgtggctagcttctgattatggaaaagatgtcattgttggtgt |
8961980 |
T |
|
| Q |
120 |
gattgataccggtgtttggccagaaagtgaaagtttcaaagataatgacatgcctcaaattccttcaaaatggaaagggcaattatgtcaatttgaaaat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| | || ||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
8961981 |
gattgataccggtgtttggccagaaagtgaaagtttcaatgataatggatttactaaaattccttcaaaatggaaagggaaattatgtcaatttgaaaat |
8962080 |
T |
|
| Q |
220 |
accaacaattcatctttttgcaacaagaaactcattggagctagattcttcaacaaagggtttttggcaaaatatccaaatctaactaacacaattttga |
319 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| | || | | | || |||| ||| |
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| T |
8962081 |
accaacaattcatctttttgcaacaaaaaactcattggagcaagattcttcaacaaagggttcttggcgatgaattccaccattgatacaacaacagtga |
8962180 |
T |
|
| Q |
320 |
actccacacgtgacacaaatggtcatgggacacacacttcaacaacagcagctgggaatcaagttgatggtgcatcattct |
400 |
Q |
| |
|
|||| |||||||||||| |||||||||| || |||||||||||||| | ||| |||||||| ||| ||||||||||||||| |
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|
| T |
8962181 |
actctacacgtgacacagatggtcatggaacccacacttcaacaacggtagcggggaatcaggttaatggtgcatcattct |
8962261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 20 - 400
Target Start/End: Complemental strand, 8947212 - 8946832
Alignment:
| Q |
20 |
tgaaacttcacacaacacactcaccacaattccttggccttaattcatacaaaggggcatggccagcttctgattatggcaaagatgtcattgttggtat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||| | | ||| ||||||||||| ||||| | |
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|
| T |
8947212 |
tgaaacttcacacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggttt |
8947113 |
T |
|
| Q |
120 |
gattgataccggtgtttggccagaaagtgaaagtttcaaagataatgacatgcctcaaattccttcaaaatggaaagggcaattatgtcaatttgaaaat |
219 |
Q |
| |
|
|||||| | ||||||||||| || ||||||||||| || ||||||| ||| || |||| |||||||||||||||||| | |||||||||||||||||| |
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|
| T |
8947112 |
gattgactcaggtgtttggcccgagagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgaaaat |
8947013 |
T |
|
| Q |
220 |
accaacaattcatctttttgcaacaagaaactcattggagctagattcttcaacaaagggtttttggcaaaatatccaaatctaactaacacaattttga |
319 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| | || ||| || | || | | || ||||| ||| |
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|
| T |
8947012 |
agcaacaattcatcattttgcaacaagaaactcattggagcaagattcttcaataaagggttatctgcgaaaaattcgaacattaatacaacaatagtga |
8946913 |
T |
|
| Q |
320 |
actccacacgtgacacaaatggtcatgggacacacacttcaacaacagcagctgggaatcaagttgatggtgcatcattct |
400 |
Q |
| |
|
|| | ||||||||||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||||| |||| |
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|
| T |
8946912 |
acactacacgtgacacaaatggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttct |
8946832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 374
Target Start/End: Original strand, 8957087 - 8957233
Alignment:
| Q |
225 |
caattcatctttttgcaacaagaaactcattggagctagattcttcaacaaagggtttttggcaaaatatccaaatctaactaacacaattttgaactcc |
324 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| || | ||||||||||||||| || | ||||||||||| |||| | | ||| |||||| |
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|
| T |
8957087 |
caattcatctctttgcaacaagaaactcattggtgccaaattcttcaacaaaggattgcaatccaaatatccaaacataac---cttaggtttaaactcc |
8957183 |
T |
|
| Q |
325 |
acacgtgacacaaatggtcatgggacacacacttcaacaacagcagctgg |
374 |
Q |
| |
|
|| ||||| || ||||||||||||| ||||||||| ||||||||||||| |
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| T |
8957184 |
actcgtgattcacatggtcatgggactcacacttcatcaacagcagctgg |
8957233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 6e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 20 - 400
Target Start/End: Complemental strand, 21688363 - 21687971
Alignment:
| Q |
20 |
tgaaacttcacacaacacactcaccacaattccttggccttaattcatacaaaggggcatggccagcttctgattatggcaaagatgtcattgttggtat |
119 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| |||||||||||| |||| | ||||||||||||| ||||||||| ||| |||||| ||||||||||| | |
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|
| T |
21688363 |
tgaagcttgacacaacacactcacctcaatttcttggccttaatccatatagaggggcatggccaacttctgattttggtaaagatatcattgttggtgt |
21688264 |
T |
|
| Q |
120 |
gattgataccggtgtttggccagaaagtgaaagtttcaaagataatgacatgcctcaaattccttcaaaatggaaagggcaattatgtcaatttgaaaat |
219 |
Q |
| |
|
|| || || |||||||||||||||||||||||||| | |||| ||| ||| || |||| || |||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
21688263 |
aatagacactggtgtttggccagaaagtgaaagttttagagatgatggaatgactaaaataccctcaaaatggaaaggccaattatgtcaatttgagaat |
21688164 |
T |
|
| Q |
220 |
accaa------------caattcatctttttgcaacaagaaactcattggagctagattcttcaacaaagggtttttggcaaaatatccaaatctaacta |
307 |
Q |
| |
|
|||| ||||| |||||| |||||||||||||||||||||||||| |||||||||||||| || ||||||||| | | || | | || |
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|
| T |
21688163 |
tccaacatccagtcaatcaatttatctttgtgcaacaagaaactcattggagctaggttcttcaacaaaggcttcttggcaaaacactccaacattagta |
21688064 |
T |
|
| Q |
308 |
acacaattttgaactccacacgtgacacaaatggtcatgggacacacacttcaacaacagcagctgggaatcaagttgatggtgcatcattct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| | |||||||||||||||| |||| |
|
|
| T |
21688063 |
caacaattttgaactccacacgtgacacaaacggtcacgggacacatacttcaacaacagcagctggaagcaaagttgatggtgcatctttct |
21687971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 374
Target Start/End: Complemental strand, 34963867 - 34963608
Alignment:
| Q |
109 |
attgttggtatgattgataccggtgtttggccagaaagtgaaagtttcaaagataatgacatgcctcaaattccttcaaaatggaaagggcaattatgtc |
208 |
Q |
| |
|
||||| ||| ||||||| || || ||||||||||||||||| || ||||||||| ||| ||| || |||||||||||||||||||||| |||| |
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|
| T |
34963867 |
attgtaggtgtgattgacacaggagtttggccagaaagtgagagcttcaaagatgatggaatgactaaaattccttcaaaatggaaaggacaatg----- |
34963773 |
T |
|
| Q |
209 |
aatttgaaaataccaa------caattcatctttttgcaacaagaaactcattggagctagattcttcaacaaagggtttttggcaaaatatccaaatct |
302 |
Q |
| |
|
|||||||| || |||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| || || ||||||||||| || | |
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|
| T |
34963772 |
----tgaaaatagcattcatttcaattcatctctttgcaacaagaaactcattggagctaaattcttcaacagaggattattagcaaaatatcctaacat |
34963677 |
T |
|
| Q |
303 |
aactaacacaattttgaactccacacgtgacacaaatggtcatgggacacacacttcaacaacagcagctgg |
374 |
Q |
| |
|
|| | | || |||||||||||||||||| | |||||||| || || |||||||||||||||||||| |
|
|
| T |
34963676 |
cac---cttaggattaaactccacacgtgacacagaaggtcatggaactcatacttcaacaacagcagctgg |
34963608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 49006880 - 49006943
Alignment:
| Q |
134 |
tttggccagaaagtgaaagtttcaaagataatgacatgcctcaaattccttcaaaatggaaagg |
197 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||| |||||| | || || |||| ||||||||| |
|
|
| T |
49006880 |
tttggccagaaagtgaaagcttcaaagatgatgagatgcctaatatcccctcaagatggaaagg |
49006943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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