View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_low_22 (Length: 406)
Name: NF8349_low_22
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 20 - 394
Target Start/End: Original strand, 38484596 - 38484970
Alignment:
| Q |
20 |
ggggcaacggtgggtttgtttgcacatttgggcgagattcgaggtatgcaacagctgaagttgaggtttcagtttttcgccactgctgctctttttaatt |
119 |
Q |
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| T |
38484596 |
ggggcaacggtgggtttgtttgcacatttgggcgagattcgaggtatgcaacagctgaagttgaggtttcagtttttcgccactgctgctctttttaatt |
38484695 |
T |
|
| Q |
120 |
taatgccagaagagcagttgttgaatgcaagggggacattgaggagcaagcttagggatgcaattcataggatgaagctaaggtatggacttggtcatcc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38484696 |
taatgccagaagagcagttgttgaatgcaagggggacattgaggagcaagcttagggatgcaattcataggatgaagctaaggtatggacttggtcatcc |
38484795 |
T |
|
| Q |
220 |
ttttaagaagctcgattctaaccaggctgatgccaagaaatttgctttgttatggaacgagataattatgtcctttagagaggaagatatcatttctgat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38484796 |
ttttaagaagctcgattctaaccaggctgatgccaagaaatttgctttgttatggaacgagataattatgtcctttagagaggaagatatcatttctgat |
38484895 |
T |
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| Q |
320 |
aaagaggttgagctgctggagctgccaaacaatgcttggaatgttagggttattcgttggccgtgttttcttctc |
394 |
Q |
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| T |
38484896 |
aaagaggttgagctgctggagctgccaaacaatgcttggaatgttagggttattcgttggccgtgttttcttctc |
38484970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 29 - 394
Target Start/End: Original strand, 30119001 - 30119366
Alignment:
| Q |
29 |
gtgggtttgtttgcacatttgggcgagattcgaggtatgcaacagctgaagttgaggtttcagtttttcgccactgctgctctttttaatttaatgccag |
128 |
Q |
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||||| ||||||||||| |||||||||||||| |||||| ||||||||||||||||| |||||||| |||| ||| | |||||| | ||||| | |
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| T |
30119001 |
gtggggttgtttgcacacctgggcgagattcgaaatatgcagcagctgaagttgaggttccagttttttgccagtgcaatccagtttaatcttatgcctg |
30119100 |
T |
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| Q |
129 |
aagagcagttgttgaatgcaagggggacattgaggagcaagcttagggatgcaattcataggatgaagctaaggtatggacttggtcatccttttaagaa |
228 |
Q |
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| |||||| |||||||||| || || ||||||| ||||||| ||| |||||| || |||||| ||||||| |||||||| ||||||| || | | ||| |
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| T |
30119101 |
aggagcagctgttgaatgctagaggaacattgaagagcaagtttaaggatgccatccataggttgaagctcaggtatgggcttggtcggccctacaggaa |
30119200 |
T |
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| Q |
229 |
gctcgattctaaccaggctgatgccaagaaatttgctttgttatggaacgagataattatgtcctttagagaggaagatatcatttctgataaagaggtt |
328 |
Q |
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|||||| |||||||||| ||| ||||| || ||||||||| ||||||||||||||||| |||| ||||| ||||| ||||| || ||||| | ||||||| |
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| T |
30119201 |
gctcgagtctaaccaggttgaggccaacaagtttgctttgatatggaacgagataattttgtcttttagggaggaggatattatctctgacagagaggtt |
30119300 |
T |
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| Q |
329 |
gagctgctggagctgccaaacaatgcttggaatgttagggttattcgttggccgtgttttcttctc |
394 |
Q |
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|||||||||||||||||| | || ||||||||||| |||||||||||||||| |||||||||||| |
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| T |
30119301 |
gagctgctggagctgccacagaactcttggaatgttcgggttattcgttggccatgttttcttctc |
30119366 |
T |
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