View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_low_23 (Length: 406)
Name: NF8349_low_23
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 52166002 - 52165628
Alignment:
| Q |
19 |
tcaggtacctgccaatcaaactgctgcaaaatctcaatagcagcagttttctgtccttcaattcgcaaactattcaacgaattcgccaaataaatcggca |
118 |
Q |
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| T |
52166002 |
tcaggtacctgccaatcaaactgctgcaaaatctcaatagcagcagttttctgtccttcaattcgcaaactattcaacgaattcgccaaataaatcggca |
52165903 |
T |
|
| Q |
119 |
attcagaagtaatttccctaatcagcttcatgcaaccatcgaaatcagtgtcaatactaagcaccaatgcaccatttgaaacaggctgaatcaactgggc |
218 |
Q |
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| T |
52165902 |
attcagaagtaatttccctaatcagcttcatgcaaccatcgaaatcagtgtcaatactaagcaccaatgcaccatttgaaacaggctgaatcaactgggc |
52165803 |
T |
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| Q |
219 |
ggttgagattttattcgctggtaggaaaacaatcgaaggaattccggctgaagcacaataagcagacagtgcagccgaggtatcaccggtggaagcacag |
318 |
Q |
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| T |
52165802 |
ggttgagattttattcgctggtaggaaaacaatcgaaggaattccggctgaagcacaataagcagacagtgcagccgaggtatcaccggtggaagcacag |
52165703 |
T |
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| Q |
319 |
ccaactccgaccaaaggacggttcattttccggaggcgattgacctgactaacaagcacagtcattccaagatct |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52165702 |
ccaactccgaccaaaggacggttcattttccggaggcgattgacctgactaacaagcacagtcattccaagatct |
52165628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 25 - 392
Target Start/End: Complemental strand, 42663904 - 42663537
Alignment:
| Q |
25 |
acctgccaatcaaactgctgcaaaatctcaatagcagcagttttctgtccttcaattcgcaaactattcaacgaattcgccaaataaatcggcaattcag |
124 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | ||||||||| | ||||||||||||||||||||||||||||| |
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| T |
42663904 |
acctgccaatcaaactgctgcaaaatctcaatggcagctgttttctgtccttcaagcctcaaactattaagcgaattcgccaaataaatcggcaattcag |
42663805 |
T |
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| Q |
125 |
aagtaatttccctaatcagcttcatgcaaccatcgaaatcagtgtcaatactaagcaccaatgcaccatttgaaacaggctgaatcaactgggcggttga |
224 |
Q |
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||| | || || |||| || ||| || ||||| |||||||| ||||| ||||| || || |||||||||| || || |||| |||||| || |||| |
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| T |
42663804 |
cagtcacctctcttatcaactgcatacacccatcaaaatcagtatcaatgctaagaacaaaagcaccatttgcaatcggttgaaccaactgagcaattga |
42663705 |
T |
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| Q |
225 |
gattttattcgctggtaggaaaacaatcgaaggaattccggctgaagcacaataagcagacagtgcagccgaggtatcaccggtggaagcacagccaact |
324 |
Q |
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|| |||| || || ||||||||||||||||| || || || || ||||||||||| |||| |||||||| ||||| || || |||||||| ||||| |
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| T |
42663704 |
aatcctattagcaggcaggaaaacaatcgaaggtatccctgccgatgcacaataagccgacaaagcagccgaagtatccccagtcgaagcacaaccaaca |
42663605 |
T |
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| Q |
325 |
ccgaccaaaggacggttcattttccggaggcgattgacctgactaacaagcacagtcattccaagatc |
392 |
Q |
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|| || | |||||||||||||| || | ||| || || |||||||||||||||||||| || ||||| |
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| T |
42663604 |
ccaacaactggacggttcatttttcgcaagcggttaacttgactaacaagcacagtcatacccagatc |
42663537 |
T |
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