View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_low_25 (Length: 401)
Name: NF8349_low_25
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_25 |
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| [»] scaffold1880 (1 HSPs) |
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| [»] scaffold1462 (1 HSPs) |
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Alignment Details
Target: scaffold1880 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: scaffold1880
Description:
Target: scaffold1880; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 795 - 422
Alignment:
| Q |
18 |
aagatatgattagtgaattatctgattgcattatcattcatattttatcttatttgaataccaaattcgctgttcgaacttgcgttttatcaaagagatg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
795 |
aagatatgattagtgaattatctgattgcattatcattcatattttatcttatttgaataccaaaatcgctgttcgaacttgcgttttatcaaagagatg |
696 |
T |
|
| Q |
118 |
gaaagatatctggnnnnnnntgtcatcacttacattgatttcagatcaattttccacttcatataagttatccacattcctttctaggttttctgatctt |
217 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
695 |
gaaagatatctggaaaaaaatgtcatcacttacattgatttcaactcaattttccacttcatataagttttccacattcctttctaggttttcagatctt |
596 |
T |
|
| Q |
218 |
cgcgatgattcaactgcactgcacactcttgattttatgctcattaatagtagtgatatgaattcccagtcaatcctgtcttctatatctacgtttcaga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
595 |
cgcgatgattcaactgcactgcacactcttgattttatgctcattactagtagggataagaatcgccagtcaatcctgtcttctatatctacgtttcaga |
496 |
T |
|
| Q |
318 |
cactaacaacacttaagcttgccgcttatacaaacccttgggtttatcaaaaaccattctttccagactctctg |
391 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||||||| ||| ||||||||||||||| |||| |
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| T |
495 |
cactaacaacacttaagcttgccgtttatacaaacccttggatttatcacaaagcattctttccagactatctg |
422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 18315854 - 18316175
Alignment:
| Q |
18 |
aagatatgattagtgaattatctgattgcattatcattcatattttatcttatttgaataccaaattcgctgttcgaacttgcgttttatcaaagagatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| ||||||| ||||||| |||||||| |
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| T |
18315854 |
aagatatgattagtgaattatctgattgcattatcattcatattttatcttatttggatgccaaaatcgctgttcaaacttgccttttatctaagagatg |
18315953 |
T |
|
| Q |
118 |
gaaagatatctggnnnnnnntgtcatcacttacattgatttcagatcaattttccacttcatataagttatccacattcctttctaggttttctgatctt |
217 |
Q |
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| || || ||||| | |||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
18315954 |
ggaaaatctctggaaaaaaattccatcacttacattggattcaactcaattttccacttcatataagctatccacattcctttctaggttttccgatctt |
18316053 |
T |
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| Q |
218 |
cgcgatgattcaactgcactgcacactcttgattttatgctcattaatagtagtgatatgaattcccagtcaatcctgtcttctatatctacgtttcaga |
317 |
Q |
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|| |||||||||| |||||| | |||||||||||||| ||| ||| | ||||| | | | | |||||||||||||||||| || || ||||||| | |
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| T |
18316054 |
cgtgatgattcaattgcactacgcactcttgattttaagcttgttactcgtagtaacgaggactgccagtcaatcctgtcttcaatgccttcgtttcaaa |
18316153 |
T |
|
| Q |
318 |
cactaacaacacttaagcttgc |
339 |
Q |
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||||||| ||||||||||||| |
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| T |
18316154 |
cactaacgtcacttaagcttgc |
18316175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 18312431 - 18312540
Alignment:
| Q |
18 |
aagatatgattagtgaattatctgattgcattatc-attcatattttatcttatttgaataccaaattcgctgttcgaacttgcgttttatcaaagagat |
116 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| ||||| || |||||| | | ||||||| ||||||||||||| ||||||||| |
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| T |
18312431 |
aagatatgattagtgaattatctgattgcattatccattcatattttaacttatctggataccagaattgctgttcaaacttgcgttttaccaaagagat |
18312530 |
T |
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| Q |
117 |
ggaaagatat |
126 |
Q |
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|||||||||| |
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| T |
18312531 |
ggaaagatat |
18312540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1462 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: scaffold1462
Description:
Target: scaffold1462; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 970 - 1338
Alignment:
| Q |
18 |
aagatatgattagtgaattatctgattgcattatcattcatattttatcttatttgaataccaaattcgctgttcgaacttgcgttttatcaaagagatg |
117 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || || | ||||||| ||||||| |||||||||||||||| |
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| T |
970 |
aagatatgattagtgaattatctgattgcattatcattctaattttatcttatttggattcccaaattgctgttcaaacttgcattttatcaaagagatg |
1069 |
T |
|
| Q |
118 |
gaaagatatctggnnnnnnntgtcatcacttacattgatttcagatcaattttccacttcatataagttatccacattcctttctaggttttctgatctt |
217 |
Q |
| |
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||||||||||||| | |||| |||||||| | |||| ||||||||| ||||| ||||| |||| |||||||||||||||||| ||||| |
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| T |
1070 |
gaaagatatctggaaacaaattccatctcttacattcacttcaactcaattttcaccttcagataagcagtccatattcctttctaggttttcctatctt |
1169 |
T |
|
| Q |
218 |
cgcgatgattcaactgcactgcacactcttgattttatgctcattaatagtagtgatatgaattcccagtcaatcctgtcttctatatctacgtttcaga |
317 |
Q |
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|| ||||||||| | | |||||||||||||| | || ||| ||||||| || | | | ||||||||||||||| ||||| ||| ||||||||| |
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| T |
1170 |
cgtgatgattca-----attacacactcttgatttgaaccttgttactagtagtaatgaggactgccagtcaatcctgtcatctatgtcttcgtttcaga |
1264 |
T |
|
| Q |
318 |
cactaacaacacttaagcttgccgcttatacaaacccttgggtttatcaaaaaccattctttccagactctctg |
391 |
Q |
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||||||| ||||||||||| | | | | | ||||| |||||||||||||| |||| ||||| |||| |||| |
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|
| T |
1265 |
cactaacgtcacttaagcttcatgttaaaatacaccctagggtttatcaaaaagcattttttcctgactatctg |
1338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 15527387 - 15527319
Alignment:
| Q |
32 |
gaattatctgattgcattatcattcatattttatcttatttgaataccaaattcgctgttcgaacttgc |
100 |
Q |
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||||| |||||||||||||||||||| ||||| || | ||||| || ||| |||||||||||||||| |
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| T |
15527387 |
gaattctctgattgcattatcattcacattttgtcatttttgagcactaaagacgctgttcgaacttgc |
15527319 |
T |
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