View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_low_27 (Length: 380)
Name: NF8349_low_27
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 136 - 330
Target Start/End: Complemental strand, 7937238 - 7937044
Alignment:
| Q |
136 |
cgccaacaaaataacaactaattttccatttctccaccaaaaatatactatcattcttagctgtgt--actgttactaaacagtgggccatgcacgtgtt |
233 |
Q |
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| T |
7937238 |
cgccaacaaaataacaactaattttccatttctccaccaaaaatatact--cattcttagctgtgtgtaccgttactaaacagtgggccatgcacgtgtt |
7937141 |
T |
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| Q |
234 |
tctctcttcacttcacaacatcatcatcatttactactactcccactcctttataatcaaaccttaaccctcccattttctcatcaccattcacttt |
330 |
Q |
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| T |
7937140 |
tctctcttcacttcacaacatcatcatcatttactactactcccactcctttataatcaaaccttaaccctcccattttctcatcaccattcacttt |
7937044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 7953023 - 7952963
Alignment:
| Q |
304 |
tcccattttctcatcaccattcactttctctcttcatttttcattgagacattcatcaaac |
364 |
Q |
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| T |
7953023 |
tcccattttctcatcacaattcactttctctcttcatttttcattgagacattcatcaaac |
7952963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 7937363 - 7937311
Alignment:
| Q |
14 |
ttcttcaccactataagcactaaacattaatccaaaggagtaaacattttatt |
66 |
Q |
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| T |
7937363 |
ttcttcaccactataagcactaaacattaatccaaaggagtaaacattttatt |
7937311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 7953101 - 7953053
Alignment:
| Q |
211 |
aaacagtgggccatgcacgtgtttctctcttcacttcacaacatcatca |
259 |
Q |
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| T |
7953101 |
aaacagtgggccatgcacgtgttttgcccttcacttcacatcatcatca |
7953053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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