View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_low_3 (Length: 759)
Name: NF8349_low_3
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 232 - 559
Target Start/End: Original strand, 1972117 - 1972441
Alignment:
| Q |
232 |
atttgatatggttattttaaaatatttgattgaaattccaattgttattttgtttcattgttcttgagaatgtaattttcccatttcacattggtggttg |
331 |
Q |
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| T |
1972117 |
atttgatttggttattttaaaatatttgattgaaattctaattgttgttttgtttcattgttcttgagaatgtaattttcccatttcacattggtggttg |
1972216 |
T |
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| Q |
332 |
atttgaagcttttgattggaatccatctacactatatgatatacaacaaagattttattgtgacttcaactttcatattgctattctaagatatacaata |
431 |
Q |
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| T |
1972217 |
atttgaagcttt-gattggaatccatctacactatatgata--caacaaagattttattgtgacttcaactttcatattgctattctaagatatacaata |
1972313 |
T |
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| Q |
432 |
atgaataggtttgtggttacatccctatcgttctattttgaattcccattttgaaaatttcctttgctttatgttgttcaattcatctttcatatgtaag |
531 |
Q |
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| T |
1972314 |
atgaataggtttgtggttacatctctatcgttctattttgaattcccattttaaaaatttcctttgctttatgttgttctattcatctttcatatgtaag |
1972413 |
T |
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| Q |
532 |
cctcttggtggttagtagaggaatattg |
559 |
Q |
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| T |
1972414 |
cctcttggtggttagtagaggaatattg |
1972441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 36 - 230
Target Start/End: Original strand, 1971850 - 1972045
Alignment:
| Q |
36 |
tggttcaagcaaattaggggcatttgattgctagggctttttcaaaa-attgtatgggtgcatgagattcattcaagtctgttttgaagttgtttcaatg |
134 |
Q |
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| T |
1971850 |
tggttcaagcaaattaggggcatttgattgctagggcttttttaaaaaattgtatgggtgaatgagattcattcaagtctgttttgaggttgtttcaata |
1971949 |
T |
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| Q |
135 |
tttgactgcaactccaacctgatatgttatctctttggtgaaatggtaggaatcaatttctttttattactatctatgccttttgagtttttgaaa |
230 |
Q |
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| T |
1971950 |
tttgaatgcaacaccaacctgatatgttatctctttggtgtaatggtaggaatcaatttctttttattactatttatgccttttgagtttttgaaa |
1972045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 1e-49; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 36 - 191
Target Start/End: Original strand, 19962826 - 19962982
Alignment:
| Q |
36 |
tggttcaagcaaattaggggcatttgattgctagggctttttcaaaa-attgtatgggtgcatgagattcattcaagtctgttttgaagttgtttcaatg |
134 |
Q |
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| T |
19962826 |
tggttcaagcaaattaggggaatttgattgctagggctttttcaaaaaattgtatgggtgcatgagattcattcaagtctgtgttgacgctgtttcaata |
19962925 |
T |
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| Q |
135 |
tttgactgcaactccaacctgatatgttatctctttggtgaaatggtaggaatcaat |
191 |
Q |
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| T |
19962926 |
tttgaccgcaactctaacacaatacgttatctctttggtaaaatggtaggaatcaat |
19962982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 255 - 335
Target Start/End: Original strand, 19963359 - 19963439
Alignment:
| Q |
255 |
atttgattgaaattccaattgttattttgtttcattgttcttgagaatgtaattttcccatttcacattggtggttgattt |
335 |
Q |
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| T |
19963359 |
atttgattgaaattctaattgttgttttgtttcattgttcttgagaatgtaattttcccatttcacattggtggttcattt |
19963439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 289 - 335
Target Start/End: Original strand, 19963451 - 19963497
Alignment:
| Q |
289 |
ttgttcttgagaatgtaattttcccatttcacattggtggttgattt |
335 |
Q |
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| T |
19963451 |
ttgttcctgagaatgtaattttcccatttcacattggtggttcattt |
19963497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 4327055 - 4326980
Alignment:
| Q |
127 |
tttcaatgtttgactgcaactccaacctgatatgttatctctttggtgaaatggtaggaatcaatttctttttatt |
202 |
Q |
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| T |
4327055 |
tttcaatccttgacagcaactccaacccgatacgttttctctttggtaaaatggtatgaatcaattttttattatt |
4326980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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