View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_low_31 (Length: 364)
Name: NF8349_low_31
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 9 - 301
Target Start/End: Original strand, 28290371 - 28290663
Alignment:
| Q |
9 |
tgagaagaaggaaggggtcgtgtttctgatgtggggagagtctgctcaggagaaaattcggtactgccattagttgatttataaatttggcgtaattgtt |
108 |
Q |
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| T |
28290371 |
tgagaagaaggaaggggtcgtgtttctgatgtggggagagtctgctcaggagaaaattcggtactgccattagttgatttataaatttggcgtaattgtt |
28290470 |
T |
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| Q |
109 |
tattttagcggaatgggtgacaagcaagttattctgcttacttttggtatgtcttatatgcagcttaattgatcaaaccaagcatcacattctaaaagct |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28290471 |
tattttagcggaatgggtgacaagcaagttattctgcttacttttggtatgtcttatatgcagcttaattgatcaaaccaagcatcacattctaaaagct |
28290570 |
T |
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| Q |
209 |
gaacatccctccgcgttgactgtgaaaagaggtttctttggctgcaagtaagttcattttccttttatattgaattgtgttaatttgattttc |
301 |
Q |
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| T |
28290571 |
gaacatccctccgtgttgactgtgaaaagaggtttctttggctgcaagtaagttcattttccttttatattgaattgtgtttatttgattttc |
28290663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 10 - 262
Target Start/End: Original strand, 28282097 - 28282348
Alignment:
| Q |
10 |
gagaagaaggaaggggtcgtgtttctgatgtggggagagtctgctcaggagaaaattcggtactgccattagttgatt-tataaatttggcgtaattgtt |
108 |
Q |
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| T |
28282097 |
gagaagaaggaaggacttgtgtttctgctgtggggagagtatgctcaggagaaaattcggtactgccattagttgattctataaatttggcgtaattgtt |
28282196 |
T |
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| Q |
109 |
tattttagcggaatgggtgacaagcaagttattctgcttacttttggtatgtcttatatgcagcttaattgatcaaaccaagcatcacattctaaaagct |
208 |
Q |
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| T |
28282197 |
tattttagcggaatgggcgacaagcaagttattcttctcactttggg--tgtcttatattcagcttaattgatcaaaccaagcatcatattctgaaagct |
28282294 |
T |
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| Q |
209 |
gaacatccctccgcgttgactgtgaaaagaggtttctttggctgcaagtaagtt |
262 |
Q |
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|||||||| || | ||||||||| |||||||||| ||||||||||||||| |
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| T |
28282295 |
gaacatccttctggagctactgtgaaaggaggtttcttcggctgcaagtaagtt |
28282348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 265 - 346
Target Start/End: Original strand, 28290673 - 28290754
Alignment:
| Q |
265 |
ttttccttttatattgaattgtgttaatttgattttctctgaacaggcacttctctaaaactaaccaacttctggagcaaaa |
346 |
Q |
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| T |
28290673 |
ttttccttttatattgaattgtgttaatttgattttctctgaacaggcacttctctaaaactaaccaacttctggagcaaaa |
28290754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 19251144 - 19251244
Alignment:
| Q |
160 |
tcttatatgcagcttaattgatcaaaccaagcatcacattctaaaagctgaacatccctccgcgttgactgtgaaaagaggtttctttggctgcaagtaa |
259 |
Q |
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|||||| |||||| |||||||| |||||||||||||||||||||||||| ||||||||| | |||||||||||||| |||||||||||||||||||||| |
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| T |
19251144 |
tcttatgtgcagcataattgatgcaaccaagcatcacattctaaaagctgcacatccctctgagttgactgtgaaaaaaggtttctttggctgcaagtaa |
19251243 |
T |
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| Q |
260 |
g |
260 |
Q |
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| T |
19251244 |
g |
19251244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 124 - 260
Target Start/End: Complemental strand, 29558474 - 29558345
Alignment:
| Q |
124 |
ggtgacaagcaagttattctgcttacttttggtatgtcttatatgcagctt-aattgatcaaaccaagcatcacattctaaaagctgaacatccctccgc |
222 |
Q |
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|||||||| |||||||||||||||||||| ||| ||||||| || ||||||||||||||||||||||||||| |||||||| ||||| |||| |
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| T |
29558474 |
ggtgacaaacaagttattctgcttacttt--------cttgtatgcagttttaattgatcaaaccaagcatcacattctgaaagctgagcatccttccgt |
29558383 |
T |
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| Q |
223 |
gttgactgtgaaaagaggtttctttggctgcaagtaag |
260 |
Q |
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| T |
29558382 |
gttgactgtgaaaagaggtttcttcggctgcaagtaag |
29558345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 284 - 346
Target Start/End: Complemental strand, 29558011 - 29557949
Alignment:
| Q |
284 |
tgtgttaatttgattttctctgaacaggcacttctctaaaactaaccaacttctggagcaaaa |
346 |
Q |
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| T |
29558011 |
tgtgtttatttgattttctctgaacaggcacttctctaaaactaaccaacttctggagcaaaa |
29557949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 28283047 - 28283111
Alignment:
| Q |
283 |
ttgtgttaatttgattttctctgaacaggcacttctctaaaactaaccaacttctggagcaaaat |
347 |
Q |
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| T |
28283047 |
ttgtgtttgtttgattttctctgaacaggcacttctctaaaactaaccaatatctggagcaaaat |
28283111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 28278529 - 28278594
Alignment:
| Q |
197 |
attctaaaagctgaacatccctccgcgttgactgtgaaaagaggtttctttggctgcaagtaagtt |
262 |
Q |
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| T |
28278529 |
attctgaaagctgcacatccctccaggttgactgtggaaagaggtttctttagctgcaagtaagtt |
28278594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 28303122 - 28303190
Alignment:
| Q |
11 |
agaagaaggaaggggtcgtgtttctgatgtggggagagtctgctcaggagaaaattcggtactgccatt |
79 |
Q |
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| T |
28303122 |
agaagaaggaaggagttgtgtttctgctgtggggaaagtctgctcaggagaaacttaggtactaccatt |
28303190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 260
Target Start/End: Original strand, 28303471 - 28303558
Alignment:
| Q |
173 |
ttaattgatcaaaccaagcatcacattctaaaagctgaacatccctccgcgttgactgtgaaaagaggtttctttggctgcaagtaag |
260 |
Q |
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||||||||| |||||| ||||||||||||||||||| |||||| |||| ||| ||| ||| ||||| |||||||| |||| ||||| |
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| T |
28303471 |
ttaattgatgcaaccaaacatcacattctaaaagctgcacatccttccggtttgtctgcgaatagaggcttctttggttgcaggtaag |
28303558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 345
Target Start/End: Original strand, 28304898 - 28304961
Alignment:
| Q |
282 |
attgtgttaatttgattttctctgaacaggcacttctctaaaactaaccaacttctggagcaaa |
345 |
Q |
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||||||| ||||| |||||||||||||||||||||||| | |||||| || ||||||||||| |
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| T |
28304898 |
attgtgtctatttgcttttctctgaacaggcacttctctcagactaacaaatatctggagcaaa |
28304961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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