View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_low_34 (Length: 355)
Name: NF8349_low_34
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 9e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 130 - 303
Target Start/End: Complemental strand, 26671987 - 26671814
Alignment:
| Q |
130 |
agaatcttatagagccttatcaacaatgttgttccccaagttttatcccagaatcttcagaaaaaactatttatgaagttctgacagtaaaaactatttg |
229 |
Q |
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| T |
26671987 |
agaatcttatagagccttatcagcaatgttgttccccaagttttatcccagaatcctcagaaaaaactatttatgaagttctgacagtaaaaactatttg |
26671888 |
T |
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| Q |
230 |
tgaagttatgtgattttaaactatttacttcaacatgacagtgtcaattaaaagcaaaacccaataaattaatt |
303 |
Q |
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| T |
26671887 |
tgaagttatgtgattttaaactatttacttcaacatgacagtgtcaattaaaagcaaaacccaataaattaatt |
26671814 |
T |
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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 26672113 - 26672052
Alignment:
| Q |
7 |
tttggtgttagccaataataacagattacttatgatgcaagtaacaatagatcgcataacag |
68 |
Q |
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| T |
26672113 |
tttgttgttagccaataataacagattacttatgatgcaagtaacaatagatcgcataacag |
26672052 |
T |
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