View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_low_35 (Length: 334)
Name: NF8349_low_35
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 314
Target Start/End: Complemental strand, 32830886 - 32830592
Alignment:
| Q |
20 |
cagttggtattaattttttcatgcaagcttctggaaatgatgctgttatatattacagtcctgaagtgtttagagaagctggagttaaaggtgagaagca |
119 |
Q |
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| T |
32830886 |
cagttggtattaattttttcatgcaagcgtctggaaatgatgctgttatatattacagtcctgaagtgtttagagaagctggagttaaaggtgagaagca |
32830787 |
T |
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| Q |
120 |
actttttggtgtcacaatcattatgggaatagcaaagacatgttttgttctattttcagcattggtattagacaaatttggaagaaggcccatgctgttg |
219 |
Q |
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| T |
32830786 |
actttttggtgtcacaatcattatgggaatagcaaagacatgttttgttctattttcagcattggtattagacagatttggaagaaggcccatgttgttg |
32830687 |
T |
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| Q |
220 |
ttgggctcatcaggtatggcagtgtccttatttgggcttggaatgggatgtactttacttcacaattcagatgaaaagcccatgtgggctattgc |
314 |
Q |
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| T |
32830686 |
ttgggctcatcaggtatggcagtgtccttatttgggcttggaatgggatgtactttacttcacaattcagatgaaaagcccatgtgggctattgc |
32830592 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 43547086 - 43547138
Alignment:
| Q |
23 |
ttggtattaattttttcatgcaagcttctggaaatgatgctgttatatattac |
75 |
Q |
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|||| |||||||| ||||||||||| |||||||| ||||| |||||||||||| |
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| T |
43547086 |
ttgggattaatttcttcatgcaagcatctggaaacgatgccgttatatattac |
43547138 |
T |
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