View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_low_38 (Length: 328)
Name: NF8349_low_38
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 4502071 - 4502389
Alignment:
| Q |
1 |
ttttcgtaccattattgaattggcgagtgtcttagtccaagggatttggccactttcgtttgattgaattgatcactatctgaaagttcaatctagttga |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
4502071 |
ttttcgtaccattattgaattggcaagtgtcttagtccaagggatttggccacttccgtttgattgaattgatcactatccgaaagttcaatctagatga |
4502170 |
T |
|
| Q |
101 |
atgtgaattttcctctaatcgctttcccacctaattccagtacctcaatttctatcatatagtttttctttgttgttcactctttcaatgataaattctt |
200 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4502171 |
atgtgatttttcctctaatcgctttcccacccaattccagtacctcaatttctatcatatagtttttctttgttgttgactctttcaatgataaattctt |
4502270 |
T |
|
| Q |
201 |
cnnnnnnnngaaa------agactctttcaacgataatgaaacctacccgaattatttaagactttgcttttgtttttggattgagtacaaattcgtgct |
294 |
Q |
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| ||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4502271 |
caaaaaaaaaaaaaaaaagagactctttcaatgataatgaaacctgcccgaattatttaagactttgcttttatttttggattgagtacaaattcgtgct |
4502370 |
T |
|
| Q |
295 |
caagtgtggttgctttctt |
313 |
Q |
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||||||||||||||||||| |
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| T |
4502371 |
caagtgtggttgctttctt |
4502389 |
T |
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