View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_low_39 (Length: 328)
Name: NF8349_low_39
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 274
Target Start/End: Original strand, 34860324 - 34860584
Alignment:
| Q |
14 |
atcaccgagagtatttatgcaacagatagagtagtattaatgtagggaagactgttaaaatagagaaattatccatcatgtcaaggcaagccagctaata |
113 |
Q |
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| T |
34860324 |
atcaccgagagtatttatgcaacagatagagtagtatttatgtagggaagactgttaaaatagagaaattatccatcatgtcaaggcaagccagctaata |
34860423 |
T |
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| Q |
114 |
tctttagaataggcgactcttacatgccacaatattcaaattaacaacagaactaactcacagagtaacaaccgagaaaaattccaaataccactctttg |
213 |
Q |
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| T |
34860424 |
tctttagaataggtgactcttacatgccacaatattcaaattaacaacagaactaactcacagagtaacaaccgagaaaaattccaaataccactctttg |
34860523 |
T |
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| Q |
214 |
aagtctgctttttcagagaagtggtaaaaagatttgttgtatttaagtagggagatcaatt |
274 |
Q |
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| T |
34860524 |
aagtctgctttttcagagaagtggtaaaaagatttgttgtatttgagtagggagatcaatt |
34860584 |
T |
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Back To:
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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 2242594 - 2242506
Alignment:
| Q |
188 |
agaaaaattccaaataccactctttgaagt--ctgctttttcagagaagtggtaaaaagatttgttgtatttaagtagggagatcaatt |
274 |
Q |
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| T |
2242594 |
agaaaacttgcacataccactctttgaattatctgctttgttagagaagtggtcaaaagattagttgtatttgagtaaggagatcaatt |
2242506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 5757387 - 5757427
Alignment:
| Q |
229 |
gagaagtggtaaaa-agatttgttgtatttaagtagggaga |
268 |
Q |
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| T |
5757387 |
gagaagtggtaaaaaagatttgttgtatttgagtagggaga |
5757427 |
T |
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