View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8349_low_4 (Length: 646)

Name: NF8349_low_4
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8349_low_4
NF8349_low_4
[»] chr8 (11 HSPs)
chr8 (24-630)||(5351219-5351820)
chr8 (341-624)||(14949383-14949666)
chr8 (341-624)||(15125709-15125992)
chr8 (339-624)||(5290218-5290503)
chr8 (341-564)||(5282633-5282856)
chr8 (353-624)||(5313688-5313959)
chr8 (339-624)||(5306480-5306765)
chr8 (356-564)||(11833226-11833434)
chr8 (164-245)||(5290007-5290088)
chr8 (164-245)||(5282006-5282087)
chr8 (164-215)||(5314085-5314136)
[»] chr6 (3 HSPs)
chr6 (353-627)||(31526355-31526629)
chr6 (439-507)||(11738952-11739020)
chr6 (178-233)||(31526186-31526241)


Alignment Details
Target: chr8 (Bit Score: 533; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 24 - 630
Target Start/End: Original strand, 5351219 - 5351820
Alignment:
Q  24 aattcctcatggcttcctgcttggttaataactccaccctccataacctataaaaagcaaagttatatatgttttcttatttatttaaataaataaaaaa 123  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5351219 aattcctcatggcttcctgcttgattaataactccaccctccataacctataaaaagcaaagttatatatgttttcttatttatttaaataaataaaaaa 5351318  T
Q  124 tgctatttaccaacatatccagaaaatgttaccagaattttatcaacttctgtcagaaactctacttgatgtgtcactaggatgactgttttctctttga 223  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5351319 tgctatttatcaacatattcagaaaatgttaccagaattttatcaacttctgtcagaaactctacttgatgtgtcactaggatgactgttttctctttga 5351418  T
Q  224 gagcactcatgacacaatcctgaaatccaaattttaagttaaaattactagtatatagaatgcagcaacnnnnnnnn-gtgcattttacgaaaacatcaa 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||         ||||||||||||||||||||||    
T  5351419 gagcactcatgacacaatcctgaaatccaaattttaagttaaaatta------tatagaatgcagcaacaaaaaaaaagtgcattttacgaaaacatcaa 5351512  T
Q  323 gtctttcaagttattgttcttacatgaaatagaattgcagcagtatgtgcatctactgcactaaaagggtcatcaagaagatatacatcagcatcattgt 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5351513 gtctttcaagttattgttcttacatgaaatagaattgcagcagtatgtgcatctactgcactaaaagggtcatcaagaagatatacatcagcatcattgt 5351612  T
Q  423 agactgctctagccaattgaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatggctaaaaccatctat 522  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5351613 agactgctctagctagttgaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatggctaaaaccatctat 5351712  T
Q  523 atccttgtccaaagcacatgcttttattgcattctcatatctgttcctttccattaattttccaaagagtatgttatcacgaattgttccactttgtatc 622  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5351713 atccttgtccaaagcacatgcttttattgcattctcatatctgttcctttccattaattttccaaagagtatgttatcacgaattgttccactttgtatc 5351812  T
Q  623 catgatgt 630  Q
    ||||||||    
T  5351813 catgatgt 5351820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 341 - 624
Target Start/End: Original strand, 14949383 - 14949666
Alignment:
Q  341 cttacatgaaatagaattgcagcagtatgtgcatctactgcactaaaagggtcatcaagaagatatacatcagcatcattgtagactgctctagccaatt 440  Q
    |||||||  ||||| |||||||| ||||| ||||| |||||||| ||||| |||||||||||||| | ||||||||||||||||||||||||||| |  |    
T  14949383 cttacattgaatagtattgcagctgtatgagcatcaactgcactgaaaggatcatcaagaagatagatatcagcatcattgtagactgctctagcaagct 14949482  T
Q  441 gaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatggctaaaaccatctatatccttgtccaaagcaca 540  Q
    |||| ||||||||||| |||||||||| |||||  |||||||  |||||||||||||||||||||||||||||| |||  |||||||| || ||||||||    
T  14949483 gaatcctttgcttttgtcctccactcatgttaatccctctctcacctatttctgtaagatcaccatggctaaaatcattgatatccttatctaaagcaca 14949582  T
Q  541 tgcttttattgcattctcatatctgttcctttccattaattttccaaagagtatgttatcacgaattgttccactttgtatcca 624  Q
     ||||| ||||| |||||||||||  |  | ||||||   || ||||||||||| |||||  ||| ||||||||||||||||||    
T  14949583 agctttaattgctttctcatatcttgttttgtccattgccttgccaaagagtatattatcttgaactgttccactttgtatcca 14949666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 341 - 624
Target Start/End: Complemental strand, 15125992 - 15125709
Alignment:
Q  341 cttacatgaaatagaattgcagcagtatgtgcatctactgcactaaaagggtcatcaagaagatatacatcagcatcattgtagactgctctagccaatt 440  Q
    |||||||  ||||| |||||||| ||||| ||||| |||||||| ||||| |||||||||||||| | ||||||||||||||||||||||||||| | ||    
T  15125992 cttacattgaatagtattgcagctgtatgagcatcaactgcactgaaaggatcatcaagaagatagatatcagcatcattgtagactgctctagctagtt 15125893  T
Q  441 gaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatggctaaaaccatctatatccttgtccaaagcaca 540  Q
    |||| ||||||||||| |||||||||| |||||  |||||||  |||||||||||||||||||| ||||||||| |||| |||||||| || ||||||||    
T  15125892 gaatcctttgcttttgtcctccactcatgttaatccctctctcacctatttctgtaagatcaccgtggctaaaatcatcgatatccttatctaaagcaca 15125793  T
Q  541 tgcttttattgcattctcatatctgttcctttccattaattttccaaagagtatgttatcacgaattgttccactttgtatcca 624  Q
     ||||| ||||| |||||||||||  |  | ||||||   || ||||| ||||| |||||  ||| ||||||||||||||||||    
T  15125792 agctttaattgctttctcatatcttgttttgtccatttccttgccaaatagtatattatcttgaactgttccactttgtatcca 15125709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 339 - 624
Target Start/End: Original strand, 5290218 - 5290503
Alignment:
Q  339 ttcttacatgaaatagaattgcagcagtatgtgcatctactgcactaaaagggtcatcaagaagatatacatcagcatcattgtagactgctctagccaa 438  Q
    |||||||||  ||||| |||||||| ||||| ||||| |||||||| ||||| |||||||| ||||| | ||||||||||||||||||||||||||| |     
T  5290218 ttcttacattgaatagtattgcagctgtatgagcatcaactgcactgaaaggatcatcaaggagatagatatcagcatcattgtagactgctctagctag 5290317  T
Q  439 ttgaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatggctaaaaccatctatatccttgtccaaagca 538  Q
    |||||| ||||||||||| |||||||||| |||||  |||||||| || ||||||||||||||||||||||||||| |||  |||||||| || || |||    
T  5290318 ttgaatcctttgcttttgtcctccactcatgttaatccctctctgaccgatttctgtaagatcaccatggctaaaatcattgatatccttatctaaggca 5290417  T
Q  539 catgcttttattgcattctcatatctgttcctttccattaattttccaaagagtatgttatcacgaattgttccactttgtatcca 624  Q
    || ||||| ||||| |||||||||||  |  | ||||||   || ||||||||||| || ||  ||| ||||||||||||||||||    
T  5290418 caagctttgattgctttctcatatcttcttttatccattggcttgccaaagagtatattttcttgaactgttccactttgtatcca 5290503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 341 - 564
Target Start/End: Original strand, 5282633 - 5282856
Alignment:
Q  341 cttacatgaaatagaattgcagcagtatgtgcatctactgcactaaaagggtcatcaagaagatatacatcagcatcattgtagactgctctagccaatt 440  Q
    |||||||  ||||| |||||||| ||||| ||||| |||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||||| | ||    
T  5282633 cttacattgaatagtattgcagctgtatgagcatcaactgcactaaaaggatcatcaaggagataaatatcagcatcattgtagactgctctagctagtt 5282732  T
Q  441 gaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatggctaaaaccatctatatccttgtccaaagcaca 540  Q
    |||| ||||||||||| |||||||| |  || |  |||||||| |||||||||||||||||||||||||| ||| |||  |||||||| || || |||||    
T  5282733 gaatcctttgcttttgtcctccacttatattgatccctctctgacctatttctgtaagatcaccatggctgaaatcattgatatccttatctaaggcaca 5282832  T
Q  541 tgcttttattgcattctcatatct 564  Q
     ||||| ||||| |||||||||||    
T  5282833 agctttaattgctttctcatatct 5282856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 353 - 624
Target Start/End: Complemental strand, 5313959 - 5313688
Alignment:
Q  353 agaattgcagcagtatgtgcatctactgcactaaaagggtcatcaagaagatatacatcagcatcattgtagactgctctagccaattgaattctttgct 452  Q
    ||||| ||||| || |||||||| || ||||| ||||| ||||| || ||||| | ||||||||||||||||||||||||||| | |||||| |||||||    
T  5313959 agaatagcagctgtgtgtgcatcaacagcactgaaaggatcatcgaggagatagatatcagcatcattgtagactgctctagctatttgaatcctttgct 5313860  T
Q  453 tttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatggctaaaaccatctatatccttgtccaaagcacatgcttttattgc 552  Q
    | || |||||||| | |||||  |||||||| ||||||||||||||||| |||| ||||||| |||| |||||||| || || |||||| |||| || ||    
T  5313859 tctgtcctccacttacgttaatccctctctgacctatttctgtaagatcgccatagctaaaatcatcaatatccttatctaaggcacatactttaatggc 5313760  T
Q  553 attctcatatctgttcctt-tccattaattttccaaagagtatgttatcacgaattgttccactttgtatcca 624  Q
    |||||||||| | ||| || ||||||   || ||||||||||| ||||| |||| ||||||||||||||||||    
T  5313759 attctcatat-ttttctttgtccattggcttgccaaagagtatattatctcgaactgttccactttgtatcca 5313688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 339 - 624
Target Start/End: Complemental strand, 5306765 - 5306480
Alignment:
Q  339 ttcttacatgaaatagaattgcagcagtatgtgcatctactgcactaaaagggtcatcaagaagatatacatcagcatcattgtagactgctctagccaa 438  Q
    |||||||||  ||||| |||||||| ||||| ||||| |||||||| ||||| |||||||| ||||| | ||| |||||| |||||||||||||||| |     
T  5306765 ttcttacattgaatagtattgcagctgtatgagcatcaactgcactgaaaggatcatcaaggagatagatatctgcatcactgtagactgctctagctag 5306666  T
Q  439 ttgaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatggctaaaaccatctatatccttgtccaaagca 538  Q
    |||||| || |||||||| ||||||||||  || |  |||||||| || ||||||||||||||||||||||| ||| |||  |  ||||| || ||||||    
T  5306665 ttgaatcctctgcttttgtcctccactcatattgatccctctctggccaatttctgtaagatcaccatggctgaaatcattgaagtccttatctaaagca 5306566  T
Q  539 catgcttttattgcattctcatatctgttcctttccattaattttccaaagagtatgttatcacgaattgttccactttgtatcca 624  Q
    || ||||| ||||| || | ||||||  |  | ||||||   || ||||||||||| || ||  ||| ||||||||||||||||||    
T  5306565 caagctttaattgctttttgatatcttcttttatccattggcttgccaaagagtatattttcttgaactgttccactttgtatcca 5306480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 356 - 564
Target Start/End: Complemental strand, 11833434 - 11833226
Alignment:
Q  356 attgcagcagtatgtgcatctactgcactaaaagggtcatcaagaagatatacatcagcatcattgtagactgctctagccaattgaattctttgctttt 455  Q
    ||||| || ||||| ||||| |||||||| ||||| |||||||| ||||| | ||| |||||||| |||||||||||||| | |||||| ||||||||||    
T  11833434 attgctgctgtatgagcatcaactgcactgaaaggatcatcaaggagatagatatctgcatcattatagactgctctagctagttgaatcctttgctttt 11833335  T
Q  456 gccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatggctaaaaccatctatatccttgtccaaagcacatgcttttattgcatt 555  Q
    | |||||||| |  || |  |||||||| || ||||||||||||||||||||||||||| |||  |||||||| |  || | ||| ||||| ||||| ||    
T  11833334 gtcctccacttatattgatccctctctgaccaatttctgtaagatcaccatggctaaaatcattgatatccttatgtaaggaacaagctttaattgcttt 11833235  T
Q  556 ctcatatct 564  Q
    |||||||||    
T  11833234 ctcatatct 11833226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 5290007 - 5290088
Alignment:
Q  164 tatcaacttctgtcagaaactctacttgatgtgtcactaggatgactgttttctctttgagagcactcatgacacaatcctg 245  Q
    ||||||||||||  |||||||| |||||||| || ||||| ||||||||||||||| | | |||| ||||||||||||||||    
T  5290007 tatcaacttctgagagaaactccacttgatgagtaactagaatgactgttttctctcttaaagcagtcatgacacaatcctg 5290088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 5282006 - 5282087
Alignment:
Q  164 tatcaacttctgtcagaaactctacttgatgtgtcactaggatgactgttttctctttgagagcactcatgacacaatcctg 245  Q
    ||||||||||||  |||||||| |||||||| || ||||| ||||||||||||||| | | |||| |||||||||| |||||    
T  5282006 tatcaacttctgagagaaactccacttgatgagtaactagaatgactgttttctctcttaaagcattcatgacacagtcctg 5282087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 5314136 - 5314085
Alignment:
Q  164 tatcaacttctgtcagaaactctacttgatgtgtcactaggatgactgtttt 215  Q
    ||||||||||||  |||||||| ||||||||||||||||  |||||||||||    
T  5314136 tatcaacttctgagagaaactccacttgatgtgtcactaaaatgactgtttt 5314085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 353 - 627
Target Start/End: Original strand, 31526355 - 31526629
Alignment:
Q  353 agaattgcagcagtatgtgcatctactgcactaaaagggtcatcaagaagatatacatcagcatcattgtagactgctctagccaattgaattctttgct 452  Q
    ||||| |||||||| || || || ||||| || |||||||||||||| ||||| | ||||||||| ||||| ||||||| ||| | |||||| |||||||    
T  31526355 agaatagcagcagtgtgcgcgtcaactgcgctgaaagggtcatcaaggagatagatatcagcatcgttgtaaactgctcgagctagttgaatcctttgct 31526454  T
Q  453 tttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatggctaaaaccatctatatccttgtccaaagcacatgcttttattgc 552  Q
    |||| |||||||| | |||||  ||||| || ||||||||||||||||||||||| || ||| |||  ||||| | |||||| ||||| ||||| || ||    
T  31526455 tttgtcctccacttaggttaatccctctttgacctatttctgtaagatcaccatgactcaaatcattgatatcttcgtccaaggcacaagctttaatagc 31526554  T
Q  553 attctcatatctgttcctt-tccattaattttccaaagagtatgttatcacgaattgttccactttgtatccatga 627  Q
    |||||||||||| | | || | ||||   || ||||||||||| ||||| ||||  ||||||||||||||||||||    
T  31526555 attctcatatct-tgctttgttcattggcttgccaaagagtatattatctcgaacggttccactttgtatccatga 31526629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 439 - 507
Target Start/End: Original strand, 11738952 - 11739020
Alignment:
Q  439 ttgaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatg 507  Q
    |||||||| ||||||||| || ||||||||||||| |||||||| ||| ||||| || |||||||||||    
T  11738952 ttgaattcgttgcttttgacccccactcaagttaactcctctctctccaatttcagtgagatcaccatg 11739020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 31526186 - 31526241
Alignment:
Q  178 agaaactctacttgatgtgtcactaggatgactgttttctctttgagagcactcat 233  Q
    |||||||| |||||||||||||| || ||||||||||||||| | |||||| ||||    
T  31526186 agaaactccacttgatgtgtcacaagaatgactgttttctctcttagagcagtcat 31526241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University