View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8349_low_40 (Length: 327)

Name: NF8349_low_40
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8349_low_40
NF8349_low_40
[»] chr1 (1 HSPs)
chr1 (16-312)||(50523412-50523708)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 50523412 - 50523708
Alignment:
Q  16 acatcaaagtattaatccgttttgtagactcttttctcctcgtcacataatctctttcttggagaacaacttcccccgcataaaatccgtcttgcacgaa 115  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50523412 acatcagagtattaatccgttttgtagactcttttctcctcatcacataatctctttcttggagaacaacttcccccgcataaaatccgtcttgcgcgaa 50523511  T
Q  116 cacttttaccgactctggatcaatttttcatatgaaattatgttgtcttacagaccgatcgacttctgagattaaattcaaatttatactcatttcttct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50523512 cacttttaccgactctggatcaatttttcatatgaaattatgttgtcttacagaccgatcgacttctgagattaaattcaaatttatactcatttcttct 50523611  T
Q  216 tagttttaattgaaaagttatatgaagtttactaatttattgtagctgtgaaacttaatatttaaattgaccaaggctggattggaaagaagtaagt 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50523612 tagttttaattgaaaagttatatgaagtttactaatttattgtagctgtgaaacttaatatttaaattgaccaaggctggattggaaagaagtaagt 50523708  T

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