View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8349_low_44 (Length: 313)
Name: NF8349_low_44
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_44 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 6029577 - 6029300
Alignment:
| Q |
1 |
aaacctagctttttctcacactccactaggttgttctcttcttcctcttcttcctccaagatgtctccttcatcttcagtgttttcccattcgaacataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6029577 |
aaacctagctttttctcacactccactaggttgttctcttcttcctcttcttcctccaagatgtctccttcatcttcagtgttttcccattcgaacataa |
6029478 |
T |
|
| Q |
101 |
attgaaatttctcactagggttgataacacgcatcttaggttttttcgaaccttgctttttctcctgctcacactcccctaggttgttctcttcttcctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6029477 |
attgaaatttctcactagggttgataacacgcatcttaggttttttcgaaccttgcgttttctcctgctcacactcccctaggttgttctcttcttcctc |
6029378 |
T |
|
| Q |
201 |
caagatgtcttcttcctccaagatgtcttcagtgtcttcccattcgaacgtaaatcgaaatttctcactaggcttgataacacgcagcttaggttt |
296 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6029377 |
caagatgt------------------cttcagtgtcttcccattcgaacgtaaatcgaaatttctcactaggcttgataacacgcatcttaggttt |
6029300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 84 - 296
Target Start/End: Complemental strand, 6029641 - 6029435
Alignment:
| Q |
84 |
ttcccattcgaacataaattgaaatttctcactagggttgataacacgcatcttaggttttttcgaaccttgctttttctcctgctcacactcccctagg |
183 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||| || |||||||||||||||||||||||| ||||| ||||||| |||||||||| ||||| |
|
|
| T |
6029641 |
ttcccattcgaaagtaaatcgaaatttctcactaggtttaataacacgcatcttaggttttttcaaacctagcttttt------ctcacactccactagg |
6029548 |
T |
|
| Q |
184 |
ttgttctcttcttcctccaagatgtcttcttcctccaagatg---------tcttcagtgtcttcccattcgaacgtaaatcgaaatttctcactaggct |
274 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||| ||||| |||||||||||||||| | |
|
|
| T |
6029547 |
ttgttctcttcttcc---------tcttcttcctccaagatgtctccttcatcttcagtgttttcccattcgaacataaattgaaatttctcactagggt |
6029457 |
T |
|
| Q |
275 |
tgataacacgcagcttaggttt |
296 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
6029456 |
tgataacacgcatcttaggttt |
6029435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 73 - 185
Target Start/End: Complemental strand, 6029370 - 6029258
Alignment:
| Q |
73 |
tcttcagtgttttcccattcgaacataaattgaaatttctcactagggttgataacacgcatcttaggttttttcgaaccttgctttttctcctgctcac |
172 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
6029370 |
tcttcagtgtcttcccattcgaacgtaaatcgaaatttctcactaggcttgataacacgcatcttaggttttttcaaaccttgctttttctgatgctcac |
6029271 |
T |
|
| Q |
173 |
actcccctaggtt |
185 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
6029270 |
actccgctaggtt |
6029258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 73 - 199
Target Start/End: Complemental strand, 6034495 - 6034369
Alignment:
| Q |
73 |
tcttcagtgttttcccattcgaacataaattgaaatttctcactagggttgataacacgcatcttaggttttttcgaaccttgctttttctcctgctcac |
172 |
Q |
| |
|
||||||||||||||||| |||||| ||||| |||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||||| |||| || |
|
|
| T |
6034495 |
tcttcagtgttttcccaatcgaacgtaaatcgaaatttctcgctaggtttagtaacacgcatcttaggttttttcgaacctagctttttcttatgcttac |
6034396 |
T |
|
| Q |
173 |
actcccctaggttgttctcttcttcct |
199 |
Q |
| |
|
||||| ||||||| ||||| ||||||| |
|
|
| T |
6034395 |
actccgctaggttattctcatcttcct |
6034369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 214 - 296
Target Start/End: Complemental strand, 6029665 - 6029582
Alignment:
| Q |
214 |
tcctccaagatgtcttc-agtgtcttcccattcgaacgtaaatcgaaatttctcactaggcttgataacacgcagcttaggttt |
296 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||| || |||||||||| ||||||||| |
|
|
| T |
6029665 |
tcctccaagatgtcttctagtttcttcccattcgaaagtaaatcgaaatttctcactaggtttaataacacgcatcttaggttt |
6029582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 6034496 - 6034425
Alignment:
| Q |
225 |
gtcttcagtgtcttcccattcgaacgtaaatcgaaatttctcactaggcttgataacacgcagcttaggttt |
296 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||| ||||| || ||||||||| ||||||||| |
|
|
| T |
6034496 |
gtcttcagtgttttcccaatcgaacgtaaatcgaaatttctcgctaggtttagtaacacgcatcttaggttt |
6034425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University