View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_low_45 (Length: 311)
Name: NF8349_low_45
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 27 - 292
Target Start/End: Complemental strand, 37223600 - 37223317
Alignment:
| Q |
27 |
aaggttcaaccaaatccaactactggtgtactatgcgcctacaactagaatgcagggggtgtgatagctttaattacaagaaatcctttaag-------- |
118 |
Q |
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| T |
37223600 |
aaggttcaaccaaatccaactactagtgtactatgcgcctgcaactagaatgcagggggtgtgatagctttaattacaagaaatcctttaagattaaact |
37223501 |
T |
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| Q |
119 |
------cttccttcct-atttcaattcatattggtttcctaattctccccctcaattatccatcttccatgtttcaggaccacac---gtataatctgga |
208 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37223500 |
catgtgcttccttccttatttcaattcatattggtttcctaattctccccttcaattatccatcttccatgtttcaggaccacacacggtataatctgga |
37223401 |
T |
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| Q |
209 |
tgatcttctgcaacacaatgttttatggatgaaattaataatttatttttcaaactaaaattaactataacctacaacatttct |
292 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37223400 |
tgatcttcagcaacacaatgttttatggatgaaattaataatttatttttcaaactaaaattaactataacctacgacatttct |
37223317 |
T |
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