View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_low_46 (Length: 310)
Name: NF8349_low_46
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 24 - 202
Target Start/End: Complemental strand, 1960357 - 1960178
Alignment:
| Q |
24 |
gcatttaagtgattgttttcagatggattctggcagggcttcctttcctcattgtaactcaaaaacaccaatttctacatgtctaataaacttagatgac |
123 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1960357 |
gcatttaagtgattgttttcagatggattctggcaggacttcctttcctcattgtaactcaaaaacaccaatttctacatgtctaataaacttagatgac |
1960258 |
T |
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| Q |
124 |
cttactcataaagtttaccttgaattctacctc-aaaccaactctatttgctatcagttacagttaagcgtggtttcttt |
202 |
Q |
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| T |
1960257 |
cttgctcataaagttaaccttgaattctacctcgaaaccaactctatttgctatcagttacagttaagcgtggtttcttt |
1960178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 291
Target Start/End: Complemental strand, 1960180 - 1960139
Alignment:
| Q |
250 |
tttgtggatttgtacagaaaacatgtattcaaacacgaaact |
291 |
Q |
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| T |
1960180 |
tttgtggatttgtgcagaaaacatgccttcaaacacgaaact |
1960139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 24 - 203
Target Start/End: Complemental strand, 39749350 - 39749170
Alignment:
| Q |
24 |
gcatttaagtgattgttttcagatggattctggcagggcttcctttcctcattgtaactcaaaaacaccaatttctacatgtctaataaacttagatgac |
123 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||||||| |||| |||| |||||| |||||||| |||| |||| ||||||||||||| |
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| T |
39749350 |
gcatttaagtgattgttttcagaaggattctggcagggcttcgtttcctctttgtgactcgaaaacatcaatttcttcatgcctaagaaacttagatgac |
39749251 |
T |
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| Q |
124 |
cttactcataaagtttaccttgaattctacc-tcaaaccaactctatttgctatcagttacagttaagcgtggtttctttt |
203 |
Q |
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| T |
39749250 |
cttgctcataaagtttaccttgaattctaccttgaaaccaactctatttgctatcagttacagttaagtgtggtttctttt |
39749170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 27088641 - 27088474
Alignment:
| Q |
24 |
gcatttaagtgattgttttcagatggattctggcagggcttcctttcctcattgtaactcaaaaacaccaatttctacatgtctaataaacttagatgac |
123 |
Q |
| |
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|||| |||||||||| ||||| | ||||||||| |||| ||||||||||| |||| || || ||||||||||| | ||||| |||| ||||||||| || |
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| T |
27088641 |
gcatctaagtgattgctttcaaagggattctggaagggtttcctttcctcgttgtgacgcagaaacaccaattgcaacatgcctaagaaacttagacgat |
27088542 |
T |
|
| Q |
124 |
cttactcataaagtttaccttgaattctacctc-aaaccaactctatttgctatcagttacagttaag |
190 |
Q |
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| T |
27088541 |
cttgctcataaggtttaccttgaattctacctcgaaaccaactccatttgttatcaattacagttaag |
27088474 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 24 - 190
Target Start/End: Original strand, 27019776 - 27019943
Alignment:
| Q |
24 |
gcatttaagtgattgttttcagatggattctggcagggcttcctttcctcattgtaactcaaaaacaccaatttctacatgtctaataaacttagatgac |
123 |
Q |
| |
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|||| |||||||||| ||||| | ||||||||| |||| ||||||||||| ||| || || ||||| ||||| | ||||| |||| ||||||||| || |
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| T |
27019776 |
gcatctaagtgattgctttcaaagggattctggaagggtttcctttcctcgctgtgacgcagaaacatcaattgcaacatgcctaagaaacttagacgat |
27019875 |
T |
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| Q |
124 |
cttactcataaagtttaccttgaattctacctc-aaaccaactctatttgctatcagttacagttaag |
190 |
Q |
| |
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||| ||||||| ||||||||||||||||||||| |||| ||||| ||||| ||||| ||||||||||| |
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| T |
27019876 |
cttgctcataaggtttaccttgaattctacctcgaaacaaactccatttgttatcaattacagttaag |
27019943 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 190
Target Start/End: Original strand, 26978044 - 26978211
Alignment:
| Q |
24 |
gcatttaagtgattgttttcagatggattctggcagggcttcctttcctcattgtaactcaaaaacaccaatttctacatgtctaataaacttagatgac |
123 |
Q |
| |
|
|||| |||||||||| ||||| | ||||||||| |||| |||||||||||||||| || | |||||| ||||| | ||||| || | |||||| || || |
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| T |
26978044 |
gcatctaagtgattgctttcaaagggattctggaagggtttcctttcctcattgtgacacgaaaacatcaattgcgacatgccttagaaacttggacgat |
26978143 |
T |
|
| Q |
124 |
cttactcataaagtttaccttgaattctacctc-aaaccaactctatttgctatcagttacagttaag |
190 |
Q |
| |
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| ||||||| ||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||||| |
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| T |
26978144 |
ttcgctcataaggtttaccttgagttctacctcgaaaccaactctatttgttatcaattacagttaag |
26978211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 24 - 190
Target Start/End: Original strand, 11631617 - 11631784
Alignment:
| Q |
24 |
gcatttaagtgattgttttcagatggattctggcagggcttcctttcctcattgtaactcaaaaacaccaatttctacatgtctaataaacttagatgac |
123 |
Q |
| |
|
|||| |||||||||| ||||| | ||||||||| |||| |||||||||||||||| ||||||||||| ||||| | | ||| ||| ||||||||||||| |
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| T |
11631617 |
gcatctaagtgattgctttcaaagggattctggaagggattcctttcctcattgtgactcaaaaacatcaattgcaaaatgcttaagaaacttagatgac |
11631716 |
T |
|
| Q |
124 |
cttactcataaagtttaccttgaattctacctc-aaaccaactctatttgctatcagttacagttaag |
190 |
Q |
| |
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||| ||||||| ||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| |
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| T |
11631717 |
cttgctcataaggtttaccttgaattctacctcgaaaccaactcaatttgctatcaattacagttaag |
11631784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 24 - 190
Target Start/End: Original strand, 34680441 - 34680608
Alignment:
| Q |
24 |
gcatttaagtgattgttttcagatggattctggcagggcttcctttcctcattgtaactcaaaaacaccaatttctacatgtctaataaacttagatgac |
123 |
Q |
| |
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|||| |||||||||| ||||| | ||||||||| |||| |||||||||||||||| || | |||||| ||||| ||||| |||| ||||||||| || |
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| T |
34680441 |
gcatctaagtgattgctttcaaagggattctggaagggtttcctttcctcattgtgacacgaaaacatcaattgtgacatgcctaagaaacttagacgat |
34680540 |
T |
|
| Q |
124 |
cttactcataaagtttaccttgaattctacctc-aaaccaactctatttgctatcagttacagttaag |
190 |
Q |
| |
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||| ||||||| ||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| |
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| T |
34680541 |
cttgctcataaggtttaccttgaattctacctcgaaaccaactctatttgttatcaattacagttaag |
34680608 |
T |
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