View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8349_low_47 (Length: 310)
Name: NF8349_low_47
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_47 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 23 - 296
Target Start/End: Original strand, 48592920 - 48593193
Alignment:
| Q |
23 |
accctagtaagttataaaacattgttggattattgttattaaattatttcttcaaaaaataataaatgtcaggattactttacggcagcaaccgacacta |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48592920 |
accctagtaagttataaaacattgttggattattgttattaaattatttcttcaaaaaataataaatgtcaggattactttacggcagcaaccgacacta |
48593019 |
T |
|
| Q |
123 |
ctgccatctccgtggaatggacaatatcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaag |
222 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48593020 |
ctgccatctccgtggaatgggcaatatcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaag |
48593119 |
T |
|
| Q |
223 |
acttgtgtgtgaagaagacggtccaaaccttccttatatacatgctatcataaaagaaacaatgaggcttcatc |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48593120 |
acttgtgtgtgaagaagacggtccaaaccttccttatatacatgctatcataaaagaaacaatgaggcttcatc |
48593193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 23 - 296
Target Start/End: Original strand, 48597531 - 48597804
Alignment:
| Q |
23 |
accctagtaagttataaaacattgttggattattgttattaaattatttcttcaaaaaataataaatgtcaggattactttacggcagcaaccgacacta |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48597531 |
accctagtaagttataaaacattgttggattattgttattaaattatttcttcaaaaaataataaatgtcaggattactttacggcagcaaccgacacta |
48597630 |
T |
|
| Q |
123 |
ctgccatctccgtggaatggacaatatcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaag |
222 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48597631 |
ctgccatctccgtggaatgggcaatatcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaag |
48597730 |
T |
|
| Q |
223 |
acttgtgtgtgaagaagacggtccaaaccttccttatatacatgctatcataaaagaaacaatgaggcttcatc |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48597731 |
acttgtgtgtgaagaagacggtccaaaccttccttatatacatgctatcataaaagaaacaatgaggcttcatc |
48597804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 91 - 294
Target Start/End: Complemental strand, 23231270 - 23231067
Alignment:
| Q |
91 |
tcaggattactttacggcagcaaccgacactactgccatctccgtggaatggacaatatcagaactgtttaacaatccaagggtgctgaaaaaagcacaa |
190 |
Q |
| |
|
|||||||||||| || ||||| |||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
23231270 |
tcaggattacttcacagcagctaccgacactactgccatctcagtcgaatgggcaatatcagaactgtttaacaatccaagggtgttgaaaaaagctcaa |
23231171 |
T |
|
| Q |
191 |
gaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtccaaaccttccttatatacatgctatcataaaagaaacaatgaggc |
290 |
Q |
| |
|
|||||||| || | |||| ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
23231170 |
gaggaggtagagagagttgtaggaaaggaaagattagtgtgtgaagaagacagtccaaaccttccttatatacatgccatcataaaagaaaccatgaggc |
23231071 |
T |
|
| Q |
291 |
ttca |
294 |
Q |
| |
|
|||| |
|
|
| T |
23231070 |
ttca |
23231067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 91 - 294
Target Start/End: Complemental strand, 23223525 - 23223322
Alignment:
| Q |
91 |
tcaggattactttacggcagcaaccgacactactgccatctccgtggaatggacaatatcagaactgtttaacaatccaagggtgctgaaaaaagcacaa |
190 |
Q |
| |
|
|||||||||||| || ||||| || || || |||||||| || |||||||||||||| |||||||||| |||||||||| || ||||| ||||||||| |
|
|
| T |
23223525 |
tcaggattacttcacagcagctacagatacaactgccatttcattggaatggacaatagcagaactgttcaacaatccaatagtactgaagaaagcacaa |
23223426 |
T |
|
| Q |
191 |
gaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtccaaaccttccttatatacatgctatcataaaagaaacaatgaggc |
290 |
Q |
| |
|
|| |||||||| | | | | | ||||||||||| || ||||||| |||| ||||||||||||||||||||| || || |||||||||||| |||||| |
|
|
| T |
23223425 |
gaagaggtggagagaataatagggaaggaaagactagtatgtgaagcagacattccaaaccttccttatatacaagccattataaaagaaacattgaggc |
23223326 |
T |
|
| Q |
291 |
ttca |
294 |
Q |
| |
|
|||| |
|
|
| T |
23223325 |
ttca |
23223322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University