View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8349_low_49 (Length: 296)
Name: NF8349_low_49
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_49 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 27 - 281
Target Start/End: Original strand, 33325140 - 33325395
Alignment:
| Q |
27 |
aattatcttctttctatttccacacatgaactaatgataataattaactaaaaaatataagaacatttctccaaattctaatgttacccattgttaattt |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
33325140 |
aattatcttctttctatttccacacatgaactaatgataataattaactaaaaaatataagaacatttctccaaattctagtgttacccattattaattt |
33325239 |
T |
|
| Q |
127 |
aaaacgtttcttgaccaattgaaaccttcggatagaaagagatagaaaatgtaataaattggatactttagtgatgtaatagaaataannnnnnnngctg |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||| |
|
|
| T |
33325240 |
aaaacgtttcttgaccaattgaaaccttcggatagaaagagatagaaaatgtaataaattggatactttggtgatgtaatagaaagaaaaaaaattgctg |
33325339 |
T |
|
| Q |
227 |
aattagtgtatg-aaaatgtggagtgttcaaatataagaattgttattgattattg |
281 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33325340 |
aattagtgtatgaaaaatgtggagtgttcaaatataataattgttattgattattg |
33325395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University