View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8349_low_5 (Length: 633)

Name: NF8349_low_5
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8349_low_5
NF8349_low_5
[»] chr1 (9 HSPs)
chr1 (14-359)||(6591219-6591564)
chr1 (386-615)||(6591595-6591828)
chr1 (61-275)||(6599562-6599779)
chr1 (462-613)||(6600958-6601109)
chr1 (489-564)||(3373523-3373598)
chr1 (107-244)||(3374121-3374258)
chr1 (107-244)||(4333528-4333665)
chr1 (61-130)||(6598377-6598449)
chr1 (499-603)||(3379507-3379611)
[»] chr2 (4 HSPs)
chr2 (474-606)||(20953745-20953877)
chr2 (474-597)||(20935216-20935339)
chr2 (115-188)||(20936200-20936273)
chr2 (90-226)||(20924552-20924688)
[»] chr5 (1 HSPs)
chr5 (108-226)||(17971149-17971267)


Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 359
Target Start/End: Original strand, 6591219 - 6591564
Alignment:
Q  14 cacacacgtaggaaagagtttagtaaaaatcattacttgagctccctagtctaggtaaataacttgagctcgcgaggctctcctcatccgcaatagttct 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6591219 cacacacgtaggaaagagtttagtaaaaatcattacttgagctccctagtctaggtaaataacttgagctcgcgaggctctcctcatccgcaatagttct 6591318  T
Q  114 ttcatcaactccggtccgacgtttaaagcaggtttcacagtcatcttttctagcacaagaaaagatagaagtagatagctgatgaagtctaactcagatt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6591319 ttcatcaactccggtccgacgtttaaagcaggtttcacagtcatcttttctagcacaagaaaagatagaagtagaaagctgatgaagtctaactcagatt 6591418  T
Q  214 tgataccagagataccaactattctcacatgcttcacttgcatgactggctgatccaaataggcacggggtgtcgacggaacaggttgctcctcagatcg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  | | ||||||||||||||||||||    
T  6591419 tgataccagagataccaactattctcacatgcttcacttgcatgattggctgatccaaataggcacggggtgtcatctggacaggttgctcctcagatcg 6591518  T
Q  314 tgcctacatacatccaatcgtaacacacaagtgggttgatgtactt 359  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||    
T  6591519 tgcctacatacatacaatcgtaacacacaagtgggttgaggtactt 6591564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 386 - 615
Target Start/End: Original strand, 6591595 - 6591828
Alignment:
Q  386 tagaattaattagaagcaagttacaattttacata----gctcttctctaacaatttcatataaataacaaaaacagtacgtactcaccaccatttccaa 481  Q
    |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6591595 tagaattaattagaagcaagttacaattttacatatatagctcttctctaacaatttcatataaataacaaaaacagtacgtactcaccaccatttccaa 6591694  T
Q  482 ttctcgtagattaggtaagcttctgaacaggcaaacagcagctgaaatctcctttgaatcattgaagtttatgcatatggaaatataacttagatcaatg 581  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6591695 ttctcgtagattaggtaagcttctgaacaggcaaacagcagctgaaatctcctttgaatcattgaagtttatgcatatggaaatataacttagatcaatg 6591794  T
Q  582 cacggggtaggaagctctactggcacaaccccta 615  Q
    ||| ||||||||||||||||||||||||||||||    
T  6591795 caccgggtaggaagctctactggcacaaccccta 6591828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 61 - 275
Target Start/End: Original strand, 6599562 - 6599779
Alignment:
Q  61 agtctaggtaaataacttgagctcg---cgaggctctcctcatccgcaatagttctttcatcaactccggtccgacgtttaaagcaggtttcacagtcat 157  Q
    |||||||||||||||||| ||||||   |||||||||||||| ||||||||||||||||| ||| ||||| | | |||||||||||||||||||||||||    
T  6599562 agtctaggtaaataacttcagctcgtcccgaggctctcctcaaccgcaatagttctttcaccaattccggactggcgtttaaagcaggtttcacagtcat 6599661  T
Q  158 cttttctagcacaagaaaagatagaagtagatagctgatgaagtctaactcagatttgataccagagataccaactattctcacatgcttcacttgcatg 257  Q
    | ||||||||||| || || ||||||||| | ||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||   |||| |||||    
T  6599662 cctttctagcacaggagaatatagaagtataaagctgatgaagtctaactcaggtttgataccagagatgccatctattctcacatgtcgcactcgcatg 6599761  T
Q  258 actggctgatccaaatag 275  Q
    ||||||  ||||||||||    
T  6599762 actggccaatccaaatag 6599779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 462 - 613
Target Start/End: Original strand, 6600958 - 6601109
Alignment:
Q  462 gtactcaccaccatttccaattctcgtagattaggtaagcttctgaacaggcaaacagcagctgaaatctcctttgaatcattgaagtttatgcatatgg 561  Q
    ||||||||||  ||||| | |||||||||||||||| |||||||||| ||||||| |||||||||||| ||||||||||||| ||||||||||| |||||    
T  6600958 gtactcaccaatatttcgagttctcgtagattaggtgagcttctgaaaaggcaaagagcagctgaaatttcctttgaatcatagaagtttatgcgtatgg 6601057  T
Q  562 aaatataacttagatcaatgcacggggtaggaagctctactggcacaacccc 613  Q
    ||| |||||||||||||||||| ||||||||||||| |||||| ||| ||||    
T  6601058 aaagataacttagatcaatgcaaggggtaggaagctttactggtacagcccc 6601109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 489 - 564
Target Start/End: Complemental strand, 3373598 - 3373523
Alignment:
Q  489 agattaggtaagcttctgaacaggcaaacagcagctgaaatctcctttgaatcattgaagtttatgcatatggaaa 564  Q
    ||||||||| ||||||||| || ||||| |||||||||||| |||||  | ||||||||||||||||||| |||||    
T  3373598 agattaggtgagcttctgagcaagcaaagagcagctgaaatttccttcaagtcattgaagtttatgcataaggaaa 3373523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 107 - 244
Target Start/End: Complemental strand, 3374258 - 3374121
Alignment:
Q  107 tagttctttcatcaactccggtccgacgtttaaagcaggtttcacagtcatcttttctagcacaagaaaagatagaagtagatagctgatgaagtctaac 206  Q
    ||||||| | ||||||||||||  |||||||| | || | |||||| ||||||||||||||||| || || || |||||||| | |  || || |||||     
T  3374258 tagttctgttatcaactccggttggacgtttacaacatgcttcacaatcatcttttctagcacaggagaatatcgaagtagaaaccgaataaaatctaat 3374159  T
Q  207 tcagatttgataccagagataccaactattctcacatg 244  Q
    || ||| ||||||||||||| ||| ||||| |||||||    
T  3374158 tctgatctgataccagagatgccatctattgtcacatg 3374121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 107 - 244
Target Start/End: Original strand, 4333528 - 4333665
Alignment:
Q  107 tagttctttcatcaactccggtccgacgtttaaagcaggtttcacagtcatcttttctagcacaagaaaagatagaagtagatagctgatgaagtctaac 206  Q
    |||| |||||||||||||||||   ||||||  | |||| |||||| |||||||||||||||| ||| || ||||||||||| | ||||| || | |||     
T  4333528 tagtgctttcatcaactccggtataacgtttgcaacaggcttcacaatcatcttttctagcaccagagaatatagaagtagaaatctgatcaaatttaat 4333627  T
Q  207 tcagatttgataccagagataccaactattctcacatg 244  Q
    ||||| | | |||||||||| ||| ||||  |||||||    
T  4333628 tcagactgggtaccagagatgccatctatcgtcacatg 4333665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 6598377 - 6598449
Alignment:
Q  61 agtctaggtaaataacttgagctcgc---gaggctctcctcatccgcaatagttctttcatcaactccggtcc 130  Q
    |||||||||| ||||||||||||||    |||||| |||||| | ||||||||||||||||||||| ||||||    
T  6598377 agtctaggtagataacttgagctcgtcctgaggctttcctcaactgcaatagttctttcatcaacttcggtcc 6598449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 603
Target Start/End: Complemental strand, 3379611 - 3379507
Alignment:
Q  499 agcttctgaacaggcaaacagcagctgaaatctcctttgaatcattgaagtttatgcatatggaaatataacttagatcaatgcacggggtaggaagctc 598  Q
    ||||||||| || |||||  ||||| ||||| |||||  |  ||||||||||||| |||| ||||| |||||||||||| || || || ||||||||||     
T  3379611 agcttctgagcaagcaaagggcagccgaaatttccttcaagacattgaagtttatacataaggaaagataacttagatcgatacaaggtgtaggaagctt 3379512  T
Q  599 tactg 603  Q
    |||||    
T  3379511 tactg 3379507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 474 - 606
Target Start/End: Complemental strand, 20953877 - 20953745
Alignment:
Q  474 atttccaattctcgtagattaggtaagcttctgaacaggcaaacagcagctgaaatctcctttgaatcattgaagtttatgcatatggaaatataactta 573  Q
    ||||| |||| ||| ||||||||| ||||||||| || ||||| |||||| ||||| ||||||   |  | |||||||||||||| ||||| ||| ||||    
T  20953877 atttctaattttcgaagattaggtgagcttctgagcaagcaaagagcagccgaaatttcctttaggttgtcgaagtttatgcataaggaaagatagctta 20953778  T
Q  574 gatcaatgcacggggtaggaagctctactggca 606  Q
    ||| ||| || || |||||||||| ||||||||    
T  20953777 gataaatacaaggtgtaggaagctttactggca 20953745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 474 - 597
Target Start/End: Complemental strand, 20935339 - 20935216
Alignment:
Q  474 atttccaattctcgtagattaggtaagcttctgaacaggcaaacagcagctgaaatctcctttgaatcattgaagtttatgcatatggaaatataactta 573  Q
    ||||| |||| ||| ||||||||| ||||||||| || ||||| |||||| ||||| |||||  | |||| |||||||||||  | ||||| || |||||    
T  20935339 atttctaattttcgaagattaggtgagcttctgagcaagcaaagagcagccgaaatttccttcaagtcatcgaagtttatgctcaaggaaagatgactta 20935240  T
Q  574 gatcaatgcacggggtaggaagct 597  Q
    |||| || || || ||||||||||    
T  20935239 gatccatacaaggtgtaggaagct 20935216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 20936273 - 20936200
Alignment:
Q  115 tcatcaactccggtccgacgtttaaagcaggtttcacagtcatcttttctagcacaagaaaagatagaagtaga 188  Q
    ||||||||||||||  || ||||  | |||| |||||||||||||||||||||||| || || |||||||||||    
T  20936273 tcatcaactccggtatgaagttttcaacaggcttcacagtcatcttttctagcacaggagaatatagaagtaga 20936200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 226
Target Start/End: Complemental strand, 20924688 - 20924552
Alignment:
Q  90 gctctcctcatccgcaatagttctttcatcaactccggtccgacgtttaaagcaggtttcacagtcatcttttctagcacaagaaaagatagaagtagat 189  Q
    |||||||| | ||| | ||||||| | ||||||||||||  |||||||  | |||| | |||| |||||||||  |||||| |  || | |||||||||     
T  20924688 gctctcctgaaccggattagttctgttatcaactccggtttgacgttttcaacaggctccacaatcatctttttgagcacaggtgaatagagaagtagaa 20924589  T
Q  190 agctgatgaagtctaactcagatttgataccagagat 226  Q
    | ||||| || ||||| ||||||||| ||||||||||    
T  20924588 atctgataaaatctaattcagatttggtaccagagat 20924552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 17971267 - 17971149
Alignment:
Q  108 agttctttcatcaactccggtccgacgtttaaagcaggtttcacagtcatcttttctagcacaagaaaagatagaagtagatagctgatgaagtctaact 207  Q
    |||||| |||||||||| |||  ||| |||  |||||| ||||||||||||||||  || ||| || || || |||||||| | || ||||| ||||| |    
T  17971267 agttctgtcatcaactcgggtttgacattttcagcaggcttcacagtcatcttttgaagaacaggagaatattgaagtagaaatctaatgaaatctaatt 17971168  T
Q  208 cagatttgataccagagat 226  Q
    |||||||| ||||||||||    
T  17971167 cagatttggtaccagagat 17971149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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