View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8349_low_52 (Length: 276)

Name: NF8349_low_52
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8349_low_52
NF8349_low_52
[»] chr8 (19 HSPs)
chr8 (43-202)||(22610266-22610422)
chr8 (105-202)||(23884065-23884166)
chr8 (44-167)||(18834356-18834474)
chr8 (113-202)||(36732549-36732640)
chr8 (43-167)||(21399647-21399770)
chr8 (43-167)||(21794140-21794263)
chr8 (133-202)||(36305900-36305970)
chr8 (43-91)||(22345169-22345217)
chr8 (43-91)||(22356829-22356877)
chr8 (43-92)||(22208273-22208322)
chr8 (49-92)||(22483790-22483833)
chr8 (42-92)||(36732410-36732460)
chr8 (44-92)||(18816295-18816343)
chr8 (31-92)||(17906836-17906897)
chr8 (166-202)||(22966707-22966744)
chr8 (120-152)||(4380691-4380723)
chr8 (120-152)||(18816369-18816401)
chr8 (120-152)||(21514637-21514669)
chr8 (44-92)||(21514695-21514743)
[»] chr3 (29 HSPs)
chr3 (43-202)||(3527156-3527311)
chr3 (113-185)||(22841351-22841423)
chr3 (103-175)||(13522333-13522408)
chr3 (43-167)||(6156641-6156763)
chr3 (44-167)||(54875474-54875596)
chr3 (33-167)||(17684824-17684957)
chr3 (43-167)||(6159335-6159458)
chr3 (43-153)||(14442119-14442228)
chr3 (57-153)||(17669711-17669806)
chr3 (43-92)||(12917305-12917354)
chr3 (43-167)||(2841505-2841628)
chr3 (31-92)||(14152386-14152447)
chr3 (49-92)||(22841284-22841327)
chr3 (127-185)||(12151028-12151085)
chr3 (127-185)||(12155105-12155165)
chr3 (43-92)||(14520450-14520499)
chr3 (43-92)||(14641547-14641596)
chr3 (43-92)||(17208528-17208577)
chr3 (51-92)||(45803338-45803379)
chr3 (58-152)||(24547146-24547238)
chr3 (49-152)||(24548959-24549057)
chr3 (57-151)||(50755267-50755360)
chr3 (127-186)||(3160707-3160765)
chr3 (31-92)||(16050931-16050992)
chr3 (43-92)||(29907643-29907692)
chr3 (43-92)||(29948809-29948858)
chr3 (43-92)||(29997963-29998012)
chr3 (120-152)||(17208470-17208502)
chr3 (127-198)||(48631232-48631303)
[»] chr4 (17 HSPs)
chr4 (43-202)||(9622383-9622542)
chr4 (43-167)||(55583126-55583249)
chr4 (113-187)||(16296783-16296857)
chr4 (43-92)||(10273387-10273436)
chr4 (33-92)||(13847205-13847264)
chr4 (49-92)||(26446211-26446254)
chr4 (44-92)||(12424290-12424338)
chr4 (43-92)||(14631139-14631188)
chr4 (43-92)||(16296942-16296991)
chr4 (127-187)||(14477544-14477603)
chr4 (50-86)||(35660966-35661002)
chr4 (58-92)||(33186907-33186941)
chr4 (43-84)||(9639022-9639063)
chr4 (43-92)||(25513855-25513904)
chr4 (120-152)||(14631081-14631113)
chr4 (120-152)||(25513797-25513829)
chr4 (120-152)||(26446153-26446185)
[»] chr1 (16 HSPs)
chr1 (43-202)||(34392662-34392821)
chr1 (43-202)||(45499436-45499595)
chr1 (17-92)||(8275962-8276037)
chr1 (43-187)||(8306516-8306659)
chr1 (44-167)||(20588566-20588690)
chr1 (44-167)||(20593104-20593228)
chr1 (43-92)||(35895103-35895152)
chr1 (43-92)||(17901793-17901842)
chr1 (43-92)||(38056671-38056720)
chr1 (43-92)||(50544876-50544925)
chr1 (57-92)||(24719523-24719558)
chr1 (43-92)||(635003-635052)
chr1 (43-92)||(28476733-28476782)
chr1 (127-187)||(21188114-21188173)
chr1 (44-84)||(22145666-22145706)
chr1 (120-152)||(28476808-28476840)
[»] chr7 (27 HSPs)
chr7 (43-202)||(18570542-18570700)
chr7 (43-199)||(8930764-8930920)
chr7 (43-202)||(13744509-13744665)
chr7 (43-202)||(33556104-33556262)
chr7 (58-202)||(36300655-36300796)
chr7 (43-167)||(58412-58532)
chr7 (59-202)||(15700750-15700890)
chr7 (44-202)||(25943163-25943319)
chr7 (31-92)||(8488081-8488142)
chr7 (31-92)||(8513740-8513801)
chr7 (43-185)||(13315081-13315219)
chr7 (44-167)||(15720709-15720831)
chr7 (161-202)||(16250342-16250383)
chr7 (43-92)||(20252181-20252230)
chr7 (43-92)||(38299752-38299801)
chr7 (43-92)||(708428-708477)
chr7 (43-92)||(15575648-15575697)
chr7 (43-92)||(18874664-18874713)
chr7 (43-92)||(19195615-19195664)
chr7 (43-92)||(47095456-47095505)
chr7 (44-92)||(43276744-43276792)
chr7 (42-86)||(43745666-43745710)
chr7 (58-92)||(15700897-15700931)
chr7 (42-92)||(48212725-48212775)
chr7 (43-92)||(3287748-3287797)
chr7 (120-152)||(15575723-15575755)
chr7 (120-152)||(48212803-48212835)
[»] scaffold0031 (1 HSPs)
scaffold0031 (43-202)||(127342-127501)
[»] chr2 (10 HSPs)
chr2 (43-175)||(28344987-28345115)
chr2 (113-185)||(25584179-25584251)
chr2 (43-187)||(149500-149646)
chr2 (43-92)||(23801500-23801549)
chr2 (43-92)||(21315475-21315524)
chr2 (43-92)||(21335265-21335314)
chr2 (42-86)||(23610636-23610680)
chr2 (113-202)||(34491312-34491401)
chr2 (43-92)||(21369297-21369346)
chr2 (120-152)||(28652626-28652658)
[»] chr6 (10 HSPs)
chr6 (43-202)||(10446108-10446270)
chr6 (127-202)||(1818848-1818924)
chr6 (42-91)||(21683073-21683122)
chr6 (43-86)||(29045281-29045324)
chr6 (17-74)||(15998911-15998968)
chr6 (43-92)||(19825485-19825534)
chr6 (43-92)||(23658093-23658142)
chr6 (120-152)||(15998835-15998867)
chr6 (44-92)||(20410512-20410560)
chr6 (127-187)||(24506196-24506255)
[»] scaffold0174 (3 HSPs)
scaffold0174 (43-185)||(19769-19909)
scaffold0174 (43-92)||(5458-5507)
scaffold0174 (44-92)||(11620-11668)
[»] chr5 (10 HSPs)
chr5 (43-202)||(21398643-21398803)
chr5 (113-202)||(22111873-22111962)
chr5 (43-167)||(32607315-32607438)
chr5 (127-202)||(1626999-1627074)
chr5 (44-92)||(23199207-23199255)
chr5 (43-92)||(16063755-16063804)
chr5 (43-92)||(18744878-18744927)
chr5 (127-183)||(21504055-21504111)
chr5 (49-92)||(1627072-1627115)
chr5 (120-152)||(1627142-1627174)
[»] scaffold0461 (1 HSPs)
scaffold0461 (120-202)||(12381-12464)
[»] scaffold0379 (1 HSPs)
scaffold0379 (44-202)||(10843-10999)
[»] scaffold0004 (5 HSPs)
scaffold0004 (43-202)||(75831-75990)
scaffold0004 (44-201)||(72982-73139)
scaffold0004 (134-202)||(110219-110288)
scaffold0004 (31-92)||(111364-111425)
scaffold0004 (43-92)||(66071-66120)
[»] scaffold0439 (1 HSPs)
scaffold0439 (103-172)||(12236-12308)
[»] scaffold0555 (2 HSPs)
scaffold0555 (113-172)||(8814-8873)
scaffold0555 (43-92)||(8745-8794)
[»] scaffold0676 (2 HSPs)
scaffold0676 (105-187)||(2726-2811)
scaffold0676 (43-92)||(2885-2934)
[»] scaffold0139 (1 HSPs)
scaffold0139 (43-86)||(23544-23587)
[»] scaffold0098 (1 HSPs)
scaffold0098 (58-167)||(40037-40145)
[»] scaffold0730 (1 HSPs)
scaffold0730 (57-186)||(6518-6643)
[»] scaffold1766 (1 HSPs)
scaffold1766 (17-74)||(669-726)
[»] scaffold0878 (2 HSPs)
scaffold0878 (43-92)||(3421-3470)
scaffold0878 (120-152)||(3496-3528)
[»] scaffold0020 (1 HSPs)
scaffold0020 (17-74)||(168972-169029)
[»] scaffold1939 (1 HSPs)
scaffold1939 (127-187)||(39-99)
[»] scaffold0853 (1 HSPs)
scaffold0853 (44-92)||(2454-2502)
[»] scaffold0431 (1 HSPs)
scaffold0431 (44-92)||(5637-5685)
[»] scaffold0414 (2 HSPs)
scaffold0414 (44-92)||(11160-11208)
scaffold0414 (113-152)||(11228-11267)
[»] scaffold0220 (1 HSPs)
scaffold0220 (25-85)||(13960-14019)
[»] scaffold0148 (1 HSPs)
scaffold0148 (43-188)||(8752-8897)
[»] scaffold0021 (2 HSPs)
scaffold0021 (128-187)||(17019-17077)
scaffold0021 (128-187)||(26550-26608)
[»] scaffold0056 (1 HSPs)
scaffold0056 (42-92)||(18279-18329)
[»] scaffold1186 (2 HSPs)
scaffold1186 (43-92)||(2024-2073)
scaffold1186 (120-152)||(1966-1998)
[»] scaffold0594 (1 HSPs)
scaffold0594 (43-92)||(2251-2300)
[»] scaffold0061 (2 HSPs)
scaffold0061 (43-92)||(14585-14634)
scaffold0061 (43-92)||(23643-23692)
[»] scaffold0048 (1 HSPs)
scaffold0048 (43-92)||(68725-68774)
[»] scaffold0005 (2 HSPs)
scaffold0005 (43-92)||(186195-186244)
scaffold0005 (120-152)||(186270-186302)
[»] scaffold0076 (1 HSPs)
scaffold0076 (8-64)||(22463-22519)
[»] scaffold0247 (2 HSPs)
scaffold0247 (120-202)||(972-1054)
scaffold0247 (44-92)||(1080-1128)
[»] scaffold0328 (1 HSPs)
scaffold0328 (43-85)||(18639-18681)
[»] scaffold0231 (1 HSPs)
scaffold0231 (43-92)||(17520-17569)
[»] scaffold0108 (1 HSPs)
scaffold0108 (43-84)||(6430-6471)
[»] scaffold0086 (1 HSPs)
scaffold0086 (43-92)||(35185-35234)
[»] scaffold0032 (1 HSPs)
scaffold0032 (17-62)||(68331-68376)
[»] scaffold0505 (1 HSPs)
scaffold0505 (44-92)||(4941-4988)
[»] scaffold0369 (1 HSPs)
scaffold0369 (120-152)||(15689-15721)
[»] scaffold0203 (1 HSPs)
scaffold0203 (120-152)||(18014-18046)


Alignment Details
Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 43 - 202
Target Start/End: Original strand, 22610266 - 22610422
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgttttgttaattttgatgttatagaa 142  Q
    ||||| ||||||| |||||| ||||||||||||||| |||||||||||||          | |||||||||||| |||||||| ||||||||||||||||    
T  22610266 ctaaggtaagggtgggactaactttctctaataatgagttgtatgattctaaaaag----gggtttaacatgttattttgttagttttgatgttatagaa 22610361  T
Q  143 attagggttaatttgtacaattgattgttgaaagagtaggtaat-cattgaattaacgtaa 202  Q
    |||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  22610362 attatggttaatttgtaaaattgattgttgaaagagtaggtaatccattgaattaacgtaa 22610422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 105 - 202
Target Start/End: Complemental strand, 23884166 - 23884065
Alignment:
Q  105 gtttaacatgttgtt---ttgttaattttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggt-aatcattgaattaacgt 200  Q
    |||||||||||||||   |||||| ||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||| |||||||||||||||||    
T  23884166 gtttaacatgttgttcttttgttagttttgatgttatagaaattagggttaaattacacaattgattgttgaaagagtaggtaaatcattgaattaacgt 23884067  T
Q  201 aa 202  Q
    ||    
T  23884066 aa 23884065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 44 - 167
Target Start/End: Complemental strand, 18834474 - 18834356
Alignment:
Q  44 taagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgttttgttaattttgatgttatagaaa 143  Q
    |||| ||||||| ||||||||||||||||||||||| ||||||||||||          | ||||||||||||||||||||| |||||||||||||||||    
T  18834474 taaggtaagggtgggactagctttctctaataatggattgtatgattctaaaag-----gggtttaacatgttgttttgttagttttgatgttatagaaa 18834380  T
Q  144 ttagggttaatttgtacaattgat 167  Q
    |||||||||| ||| | |||||||    
T  18834379 ttagggttaaattgcaaaattgat 18834356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 36732549 - 36732640
Alignment:
Q  113 tgttgttttgttaattttgat-gttatagaaattagggttaatttgtacaattgattgttgaaagagtaggt-aatcattgaattaacgtaa 202  Q
    ||||||||||||||||| ||| ||||| |||||||||||||||||| | ||||||||||||||||||||||| || ||||||||||||||||    
T  36732549 tgttgttttgttaatttagattgttattgaaattagggttaatttgcaaaattgattgttgaaagagtaggtaaaccattgaattaacgtaa 36732640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 21399770 - 21399647
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaaca---tgttgttttgttaattttgatgttata 139  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||          | ||||||||   ||||||||||||| |||||||||||||    
T  21399770 ctaaggtaagggtgggactagctttctctaataatgggttgtatgattct----aaaaaggggtttaacatgttgttgttttgttagttttgatgttata 21399675  T
Q  140 gaaattagggttaatttgtacaattgat 167  Q
    |||||||||||||| ||| | |||||||    
T  21399674 gaaattagggttaaattgcaaaattgat 21399647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 21794263 - 21794140
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaaca---tgttgttttgttaattttgatgttata 139  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||          | ||||||||   ||||||||||||| |||||||||||||    
T  21794263 ctaaggtaagggtgggactagctttctctaataatgggttgtatgattct----aaaaaggggtttaacatgttgttgttttgttagttttgatgttata 21794168  T
Q  140 gaaattagggttaatttgtacaattgat 167  Q
    |||||||||||||| ||| | |||||||    
T  21794167 gaaattagggttaaattgcaaaattgat 21794140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 36305970 - 36305900
Alignment:
Q  133 tgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggt-aatcattgaattaacgtaa 202  Q
    ||||||||||||||||||||||||| | | ||||||||||||||||||||| || ||||||||||||||||    
T  36305970 tgttatagaaattagggttaatttgcaaagttgattgttgaaagagtaggtaaaccattgaattaacgtaa 36305900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 22345217 - 22345169
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattc 91  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  22345217 ctaaggtaagggtgggactagctttctctaataatgggttgtatgattc 22345169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 22356877 - 22356829
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattc 91  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  22356877 ctaaggtaagggtgggactagctttctctaataatgggttgtatgattc 22356829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 22208322 - 22208273
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  22208322 ctaaggtaagggtgggactagctttctctaataatgggttgtataattct 22208273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 22483833 - 22483790
Alignment:
Q  49 taagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||||| |||||||||||||||||||||||||||||| |||||    
T  22483833 taagggtgggactagctttctctaataatgggttgtataattct 22483790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 36732410 - 36732460
Alignment:
Q  42 cctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    |||||| |||||||  ||||||||||||||||||||||||||||| |||||    
T  36732410 cctaaggtaagggtgtgactagctttctctaataatgggttgtataattct 36732460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 18816295 - 18816343
Alignment:
Q  44 taagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    |||| ||||||| ||||||||||||||||| |||||||||||| |||||    
T  18816295 taaggtaagggtgggactagctttctctaaaaatgggttgtataattct 18816343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 17906836 - 17906897
Alignment:
Q  31 cgatcgattatcctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    |||||||||| |||||| ||||||| |||||| |||||||||||  |  |||||||||||||    
T  17906836 cgatcgattaacctaaggtaagggtgggactaactttctctaattctaagttgtatgattct 17906897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 22966744 - 22966707
Alignment:
Q  166 attgttgaaagagtaggt-aatcattgaattaacgtaa 202  Q
    |||||||||||||||||| |||||||||||||||||||    
T  22966744 attgttgaaagagtaggtaaatcattgaattaacgtaa 22966707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 4380691 - 4380723
Alignment:
Q  120 ttgttaattttgatgttatagaaattagggtta 152  Q
    |||||| ||||||||||||||||||||||||||    
T  4380691 ttgttagttttgatgttatagaaattagggtta 4380723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 18816369 - 18816401
Alignment:
Q  120 ttgttaattttgatgttatagaaattagggtta 152  Q
    |||||| ||||||||||||||||||||||||||    
T  18816369 ttgttagttttgatgttatagaaattagggtta 18816401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 21514669 - 21514637
Alignment:
Q  120 ttgttaattttgatgttatagaaattagggtta 152  Q
    |||||| ||||||||||||||||||||||||||    
T  21514669 ttgttagttttgatgttatagaaattagggtta 21514637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 21514743 - 21514695
Alignment:
Q  44 taagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    |||| ||||||| ||||||| |||||||||||||| ||||||| |||||    
T  21514743 taaggtaagggtgggactagatttctctaataatgagttgtataattct 21514695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 9e-39; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 43 - 202
Target Start/End: Original strand, 3527156 - 3527311
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgttttgttaattttgatgttatagaa 142  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||| |          | ||||||||||||||||||||| ||||||||||||||||    
T  3527156 ctaaggtaagggtgggactagctttctctaataatgggttgtatgattttaaaaag----gggtttaacatgttgttttgttagttttgatgttatagaa 3527251  T
Q  143 attagggttaatttgtacaattgattgttgaaagagtaggtaa-tcattgaattaacgtaa 202  Q
    |||||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||    
T  3527252 attagggttaatttgta-gattgattgttgaaagagtaggtaagccattgaattaacgtaa 3527311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 22841351 - 22841423
Alignment:
Q  113 tgttgttttgttaattttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaa 185  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22841351 tgttgttttgttagttttgaggttatagaaattagggttaatttgtagaattgattgttgaaagagtaggtaa 22841423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 13522333 - 13522408
Alignment:
Q  103 gagtttaacatgttg---ttttgttaattttgatgttatagaaattagggttaatttgtacaattgattgttgaaa 175  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  13522333 gagtttaacatgttgatgttttgttaattttgatgttatagaaattagggttaatttatagaattgattgttgaaa 13522408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 6156763 - 6156641
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaaca---tgttgttttgttaattttgatgttata 139  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||          | ||||||||   ||||||||||||| |||||||||||||    
T  6156763 ctaaggtaagggtgggactagctttctctaataatgggttgtatgattct-----aaaaggggtttaacatgttgttgttttgttagttttgatgttata 6156669  T
Q  140 gaaattagggttaatttgtacaattgat 167  Q
    |||||||||||||| ||| | |||||||    
T  6156668 gaaattagggttaaattgcagaattgat 6156641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 167
Target Start/End: Original strand, 54875474 - 54875596
Alignment:
Q  44 taagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaaca---tgttgttttgttaattttgatgttatag 140  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||          | ||||||||   ||||||||||||| ||||||||||||||    
T  54875474 taaggtaagggtgggactagctttctctaataatgggttgtatgattct----aaaaaggggtttaacatgttgttgttttgttagttttgatgttatag 54875569  T
Q  141 aaattagggttaatttgtacaattgat 167  Q
    ||||||||||||| ||| | |||||||    
T  54875570 aaattagggttaaattgcaaaattgat 54875596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 167
Target Start/End: Original strand, 17684824 - 17684957
Alignment:
Q  33 atcgattatcctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacat---gttgttttgttaattt 129  Q
    ||||||| || |||| ||||||| ||||||| ||||| ||||||||||||||||||||||          | |||||||||   |||||||||||| |||    
T  17684824 atcgattttcttaaggtaagggtgggactagttttctgtaataatgggttgtatgattctaaaaag----gggtttaacatcttgttgttttgttagttt 17684919  T
Q  130 tgatgttatagaaattagggttaatttgtacaattgat 167  Q
    |||||||||||||||||||||||| ||| | |||||||    
T  17684920 tgatgttatagaaattagggttaaattgcaaaattgat 17684957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 6159458 - 6159335
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgtt---ttgttaattttgatgttata 139  Q
    ||||| |||||||  |||| ||||||||||||||||||||||||||||||          | |||||||||||||||   |||||| |||||||||||||    
T  6159458 ctaaggtaagggtgagactcgctttctctaataatgggttgtatgattctaaaaag----gggtttaacatgttgttgttttgttagttttgatgttata 6159363  T
Q  140 gaaattagggttaatttgtacaattgat 167  Q
    |||||||||||||| ||| | |||||||    
T  6159362 gaaattagggttaaattgcagaattgat 6159335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 153
Target Start/End: Complemental strand, 14442228 - 14442119
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaaca---tgttgttttgttaattttgatgttata 139  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||||||||||            ||||||||   ||||||||||||| |||||||||||||    
T  14442228 ctaaggtaagggtgggactagctttctgtaataatgggttgtatgattctaaaaagcg----gtttaacatgttgttgttttgttagttttgatgttata 14442133  T
Q  140 gaaattagggttaa 153  Q
    ||||||||||||||    
T  14442132 gaaattagggttaa 14442119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 153
Target Start/End: Original strand, 17669711 - 17669806
Alignment:
Q  57 ggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgtt---gttttgttaattttgatgttatagaaattagggttaa 153  Q
    ||||||||||||||||||||||||||||||||||||          | ||||||||||||   ||||||||| |||||||||||||||||||||||||||    
T  17669711 ggactagctttctctaataatgggttgtatgattctaaaaag----gggtttaacatgttgttgttttgttagttttgatgttatagaaattagggttaa 17669806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 12917305 - 12917354
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  12917305 ctaagataagggtgggactaactttctctaataatgggttgtatgattct 12917354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 2841505 - 2841628
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaaca---tgttgttttgttaattttgatgttata 139  Q
    ||||| |||||||  |||||||||||||||||||||||||||||||||||            ||||||||   ||||||||||||| |||||||||||||    
T  2841505 ctaaggtaagggtgtgactagctttctctaataatgggttgtatgattctaaaaagag----gtttaacatgttgttgttttgttagttttgatgttata 2841600  T
Q  140 gaaattagggttaatttgtacaattgat 167  Q
    |||||||| ||||| ||| | |||||||    
T  2841601 gaaattagagttaaattgcagaattgat 2841628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 14152386 - 14152447
Alignment:
Q  31 cgatcgattatcctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| |||| |||||| ||||||| |||||||||||||||||||||| ||||||| |||||    
T  14152386 cgatccattaacctaaggtaagggtgggactagctttctctaataatgagttgtatcattct 14152447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 22841284 - 22841327
Alignment:
Q  49 taagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||||| |||||||||||||||||||||||||||||| |||||    
T  22841284 taagggtgggactagctttctctaataatgggttgtataattct 22841327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 12151028 - 12151085
Alignment:
Q  127 ttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaa 185  Q
    |||||||||||||||| ||||||||||||| |  |||||||||||||||| ||||||||    
T  12151028 ttttgatgttatagaagttagggttaattt-tcaaattgattgttgaaagtgtaggtaa 12151085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 12155105 - 12155165
Alignment:
Q  127 ttttgatgttatagaaattagggttaatttgta--caattgattgttgaaagagtaggtaa 185  Q
    |||||||||||||||| |||||||||||||| |   |||||||||||||||| ||||||||    
T  12155105 ttttgatgttatagaagttagggttaatttgcaattaattgattgttgaaagtgtaggtaa 12155165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 14520499 - 14520450
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| ||||||||||||| |||||||||||||||| |||||    
T  14520499 ctaaggtaagggtgggactagctttctttaataatgggttgtataattct 14520450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 14641547 - 14641596
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||| |||||    
T  14641547 ctaaggtaagggtgggattagctttctctaataatgggttgtataattct 14641596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 17208577 - 17208528
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||| |||||    
T  17208577 ctaaggtaagggtgggactagctttctctaataatgagttgtataattct 17208528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 45803338 - 45803379
Alignment:
Q  51 agggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  45803338 agggtgggactagctttctctaataatgggttgtataattct 45803379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 24547238 - 24547146
Alignment:
Q  58 gactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaaca---tgttgttttgttaattttgatgttatagaaattagggtta 152  Q
    ||||| |||||||||||||||||||||||||||||          ||||||||||   |||||||||||| | |||||||||||||||||||||||||    
T  24547238 gactatctttctctaataatgggttgtatgattct----aaaaaggagtttaacatgttgttgttttgtt-agtttgatgttatagaaattagggtta 24547146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 24548959 - 24549057
Alignment:
Q  49 taagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgttttgttaattttgatgttatagaaattagg 148  Q
    |||||||  ||||| |||| ||||||||||||||||||||||||          | |||||| |||||||||||||| ||| ||||||||||||||||||    
T  24548959 taagggtgagactaactttatctaataatgggttgtatgattctaaaaag----gggtttaatatgttgttttgttagttt-gatgttatagaaattagg 24549053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 50755267 - 50755360
Alignment:
Q  57 ggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgtt---ttgttaattttgatgttatagaaattagggtt 151  Q
    |||||| |||||||||||||||| ||||||||||||          | |||||||||||||||   |||||| |||||||||||||||||||||||||    
T  50755267 ggactaactttctctaataatggattgtatgattctaaaaag----gggtttaacatgttgttgctttgttagttttgatgttatagaaattagggtt 50755360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 3160707 - 3160765
Alignment:
Q  127 ttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaat 186  Q
    ||||||| |||||||||||||| |||| ||| | | ||||||||||||||||||||||||    
T  3160707 ttttgatattatagaaattaggtttaaattgca-atttgattgttgaaagagtaggtaat 3160765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 16050992 - 16050931
Alignment:
Q  31 cgatcgattatcctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    |||||||||| |||||| ||||||| |||||| |||||||||||  |  |||||||||||||    
T  16050992 cgatcgattaacctaaggtaagggtgggactaactttctctaattctaagttgtatgattct 16050931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 29907692 - 29907643
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| ||||||||||||| ||||| |||||||||| |||||    
T  29907692 ctaaggtaagggtgggactagctttctttaatattgggttgtataattct 29907643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 29948858 - 29948809
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| ||||||||||||| ||||| |||||||||| |||||    
T  29948858 ctaaggtaagggtgggactagctttctttaatattgggttgtataattct 29948809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 29998012 - 29997963
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| ||||||||||||| ||||| |||||||||| |||||    
T  29998012 ctaaggtaagggtgggactagctttctttaatattgggttgtataattct 29997963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 17208502 - 17208470
Alignment:
Q  120 ttgttaattttgatgttatagaaattagggtta 152  Q
    |||||| ||||||||||||||||||||||||||    
T  17208502 ttgttagttttgatgttatagaaattagggtta 17208470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 48631303 - 48631232
Alignment:
Q  127 ttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaa-tcattgaattaac 198  Q
    |||||||||||||||| | |||||||| |||   |||||||||||||||| |||||||| ||| |||||||||    
T  48631303 ttttgatgttatagaagtcagggttaaattgct-aattgattgttgaaagtgtaggtaattcaatgaattaac 48631232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 202
Target Start/End: Complemental strand, 9622542 - 9622383
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgtt---ttgttaattttgatgttata 139  Q
    ||||| ||||||| |||||||||||||||||||||||||||| |||||||          | |||||||||||||||   |||||| |||||||||||||    
T  9622542 ctaaggtaagggtgggactagctttctctaataatgggttgtctgattctaaaaag----gggtttaacatgttgttgttttgttagttttgatgttata 9622447  T
Q  140 gaaattagggttaatttgtacaattgattgttgaaagagtaggtaat-cattgaattaacgtaa 202  Q
    |||||||||||||| ||| | |||||||||||||||||||||||||| ||||||||||||||||    
T  9622446 gaaattagggttaaattgcaaaattgattgttgaaagagtaggtaatccattgaattaacgtaa 9622383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 55583249 - 55583126
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaaca---tgttgttttgttaattttgatgttata 139  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||| |          | ||||||||   ||||||||||||| |||||||||||||    
T  55583249 ctaaggtaagggtgggactagctttctctaataatgggttgtatgattat----aaaaaggggtttaacatgttgttgttttgttagttttgatgttata 55583154  T
Q  140 gaaattagggttaatttgtacaattgat 167  Q
    |||||||||||||| ||| | |||||||    
T  55583153 gaaattagggttaaattgcaaaattgat 55583126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 16296857 - 16296783
Alignment:
Q  113 tgttgttttgttaattttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc 187  Q
    ||||||||||||| |||||||||||||||||||||||||      || |||||||||||||||||||||||||||    
T  16296857 tgttgttttgttagttttgatgttatagaaattagggtttgaaattaaaattgattgttgaaagagtaggtaatc 16296783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 10273436 - 10273387
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  10273436 ctaaggtaagggtgggactagctttctctaataatgggttgtatgattct 10273387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 13847264 - 13847205
Alignment:
Q  33 atcgattatcctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    |||||||| |||||| |||||||  ||||||||||||||||||||||||||||| |||||    
T  13847264 atcgattaacctaaggtaagggtgagactagctttctctaataatgggttgtataattct 13847205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 26446254 - 26446211
Alignment:
Q  49 taagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  26446254 taagggtaggactagctttctctaataatgggttgtataattct 26446211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 12424290 - 12424338
Alignment:
Q  44 taagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    |||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  12424290 taaggtaagggtgggactagctttctctaataatgggttgtataattct 12424338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 14631188 - 14631139
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| |||||||  ||||||||||||||||||||||||||||| |||||    
T  14631188 ctaaggtaagggtgagactagctttctctaataatgggttgtataattct 14631139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 16296991 - 16296942
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||| |||||    
T  16296991 ctaaggtaagggtgggactagctttctctaataatgagttgtataattct 16296942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 14477603 - 14477544
Alignment:
Q  127 ttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc 187  Q
    |||||||||||||||| |||||||||| ||| | | |||||||||||||| ||||||||||    
T  14477603 ttttgatgttatagaagttagggttaaattg-aaatttgattgttgaaagtgtaggtaatc 14477544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 35661002 - 35660966
Alignment:
Q  50 aagggtaggactagctttctctaataatgggttgtat 86  Q
    |||||| ||||||||||||||||||||||||||||||    
T  35661002 aagggtgggactagctttctctaataatgggttgtat 35660966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 92
Target Start/End: Complemental strand, 33186941 - 33186907
Alignment:
Q  58 gactagctttctctaataatgggttgtatgattct 92  Q
    ||||||||||||||||||||||||||||| |||||    
T  33186941 gactagctttctctaataatgggttgtataattct 33186907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 9639063 - 9639022
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgt 84  Q
    ||||| ||||||| |||||||||||||||||||||| |||||    
T  9639063 ctaaggtaagggtgggactagctttctctaataatgagttgt 9639022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 25513904 - 25513855
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||| ||| |||||||||||||||||||||| ||||||| |||||    
T  25513904 ctaaggtaatggtgggactagctttctctaataatgagttgtataattct 25513855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 14631113 - 14631081
Alignment:
Q  120 ttgttaattttgatgttatagaaattagggtta 152  Q
    |||||| ||||||||||||||||||||||||||    
T  14631113 ttgttagttttgatgttatagaaattagggtta 14631081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 25513829 - 25513797
Alignment:
Q  120 ttgttaattttgatgttatagaaattagggtta 152  Q
    |||||| ||||||||||||||||||||||||||    
T  25513829 ttgttagttttgatgttatagaaattagggtta 25513797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 26446185 - 26446153
Alignment:
Q  120 ttgttaattttgatgttatagaaattagggtta 152  Q
    |||||| ||||||||||||||||||||||||||    
T  26446185 ttgttagttttgatgttatagaaattagggtta 26446153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 202
Target Start/End: Complemental strand, 34392821 - 34392662
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgtt---ttgttaattttgatgttata 139  Q
    ||||| |||||||  |||||||||||||||||||||||||||||||||||          | |||||||||||||||   |||||| |||||||||||||    
T  34392821 ctaaggtaagggtgtgactagctttctctaataatgggttgtatgattctaaaaag----gggtttaacatgttgttgttttgttagttttgatgttata 34392726  T
Q  140 gaaattagggttaatttgtacaattgattgttgaaagagtaggtaat-cattgaattaacgtaa 202  Q
    |||||||||||||| ||| | |||||||||||||||||||||||||| ||||||||||||||||    
T  34392725 gaaattagggttaaattgcaaaattgattgttgaaagagtaggtaatccattgaattaacgtaa 34392662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 202
Target Start/End: Complemental strand, 45499595 - 45499436
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgtt---ttgttaattttgatgttata 139  Q
    ||||| |||||||  |||||||||||||||||||||||||||||||||||          | |||||||||||||||   |||||| |||| | ||||||    
T  45499595 ctaaggtaagggtgagactagctttctctaataatgggttgtatgattctataaag----gggtttaacatgttgttgttttgttagttttaacgttata 45499500  T
Q  140 gaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc-attgaattaacgtaa 202  Q
    |||||||||||||| ||| | | ||||||||||||||||||||||| | ||||| |||||||||    
T  45499499 gaaattagggttaaattgcaaagttgattgttgaaagagtaggtaaactattgatttaacgtaa 45499436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 8275962 - 8276037
Alignment:
Q  17 agaggaagggctgccgatcgattatcctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||||||||||||||||||||||||||||| |||||||  |||||||||| |||||||||| || |||| |||||    
T  8275962 agaggaagggctgccgatcgattatcctaaggtaagggtgtgactagctttatctaataatgagtggtataattct 8276037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 43 - 187
Target Start/End: Complemental strand, 8306659 - 8306516
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgtt---gttttgttaattttgatgttata 139  Q
    ||||| |||| || |||||||||||||||||||||||||||||| |||||          | ||||||||||||   ||||||||| |||||||||||||    
T  8306659 ctaaggtaagagtgggactagctttctctaataatgggttgtataattct----aaaaaggggtttaacatgttgtcgttttgttagttttgatgttata 8306564  T
Q  140 gaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc 187  Q
    ||||||||||||      || |||||||||||||||||||||||||||    
T  8306563 gaaattagggtttgaaattaaaattgattgttgaaagagtaggtaatc 8306516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 167
Target Start/End: Complemental strand, 20588690 - 20588566
Alignment:
Q  44 taagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgtt---gttttgttaattttgatgttatag 140  Q
    |||| ||||||| ||| ||||||||||||||||||||||||||||||||          | ||||||||||||   ||||||||| ||||||||||||||    
T  20588690 taaggtaagggtgggattagctttctctaataatgggttgtatgattctaaaaaaaa--gggtttaacatgtttttgttttgttagttttgatgttatag 20588593  T
Q  141 aaattagggttaatttgtacaattgat 167  Q
    ||||||||||||| ||| | |||||||    
T  20588592 aaattagggttaaattgcaaaattgat 20588566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 167
Target Start/End: Complemental strand, 20593228 - 20593104
Alignment:
Q  44 taagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgtt---gttttgttaattttgatgttatag 140  Q
    |||| ||||||| ||| ||||||||||||||||||||||||||||||||          | ||||||||||||   ||||||||| ||||||||||||||    
T  20593228 taaggtaagggtgggattagctttctctaataatgggttgtatgattctaaaaaaaa--gggtttaacatgtttttgttttgttagttttgatgttatag 20593131  T
Q  141 aaattagggttaatttgtacaattgat 167  Q
    ||||||||||||| ||| | |||||||    
T  20593130 aaattagggttaaattgcaaaattgat 20593104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 35895152 - 35895103
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| || |||||||||||||||| ||||||||||||||||||||||||    
T  35895152 ctaaggtatgggtaggactagctttatctaataatgggttgtatgattct 35895103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 17901793 - 17901842
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| |||||||  ||||||||||||||||||||||||||||| |||||    
T  17901793 ctaaggtaagggtgagactagctttctctaataatgggttgtataattct 17901842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 38056671 - 38056720
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| |||||||||||||||| ||||||||||||| |||||    
T  38056671 ctaaggtaagggtgggactagctttctctagtaatgggttgtataattct 38056720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 50544925 - 50544876
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| |||||||  ||||||||||||||||||||||||||||| |||||    
T  50544925 ctaaggtaagggtgagactagctttctctaataatgggttgtataattct 50544876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 24719523 - 24719558
Alignment:
Q  57 ggactagctttctctaataatgggttgtatgattct 92  Q
    |||||||||||||||||||||||||||||| |||||    
T  24719523 ggactagctttctctaataatgggttgtataattct 24719558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 635003 - 635052
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| |||||||  |||||||||||||||||||| |||||||| |||||    
T  635003 ctaaggtaagggtgagactagctttctctaataataggttgtataattct 635052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 28476733 - 28476782
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| ||||||| |||||||||||||| ||||||| |||||    
T  28476733 ctaaggtaagggtgggactagatttctctaataatgagttgtataattct 28476782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 21188114 - 21188173
Alignment:
Q  127 ttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc 187  Q
    |||||||||||||||| ||||| |||| ||| | | |||||||||||||| ||||||||||    
T  21188114 ttttgatgttatagaagttaggtttaaattgca-atttgattgttgaaagtgtaggtaatc 21188173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 22145666 - 22145706
Alignment:
Q  44 taagataagggtaggactagctttctctaataatgggttgt 84  Q
    |||| ||||||| |||||| |||||||||||||||||||||    
T  22145666 taaggtaagggtgggactaactttctctaataatgggttgt 22145706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 28476808 - 28476840
Alignment:
Q  120 ttgttaattttgatgttatagaaattagggtta 152  Q
    |||||| ||||||||||||||||||||||||||    
T  28476808 ttgttagttttgatgttatagaaattagggtta 28476840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 43 - 202
Target Start/End: Complemental strand, 18570700 - 18570542
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacat---gttgttttgttaattttgatgttata 139  Q
    ||||| |||||||  |||||||||||||||||||||||||||| ||||||          | |||||||||   |||||||||||| |||||||||||||    
T  18570700 ctaaggtaagggtgagactagctttctctaataatgggttgtaagattctagaaag----gggtttaacatattgttgttttgttagttttgatgttata 18570605  T
Q  140 gaaattagggttaatttgtacaattgattgttgaaagagtaggtaatcattgaattaacgtaa 202  Q
    ||| ||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  18570604 gaagttatggttaatttgtagaattgattgttgaaagagtaggtaaccattgaattaacgtaa 18570542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 199
Target Start/End: Original strand, 8930764 - 8930920
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgtt---gttttgttaattttgatgttata 139  Q
    ||||| ||||||| ||||||  ||||||||||||||||||||||||||||          | ||||||||||||   ||||||||| |||||||||||||    
T  8930764 ctaaggtaagggtgggactacatttctctaataatgggttgtatgattctaaaaag----gggtttaacatgttgttgttttgttagttttgatgttata 8930859  T
Q  140 gaaattagggttaatttgtacaattgattgttgaaagagtaggt-aatcattgaattaacg 199  Q
    |||||||||||||||||| | ||||||||||||||||||||||| || |||||||||||||    
T  8930860 gaaattagggttaatttgcaaaattgattgttgaaagagtaggtaaaccattgaattaacg 8930920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 202
Target Start/End: Original strand, 13744509 - 13744665
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgttttgttaattttgatgttatagaa 142  Q
    ||||| ||||||| |||||||||||||||||||||||||| |||||||||          | ||||||||||||||||||||| |||| |||||||||||    
T  13744509 ctaaggtaagggtgggactagctttctctaataatgggttttatgattctaaaaag----gggtttaacatgttgttttgttatttttaatgttatagaa 13744604  T
Q  143 attagggttaatttgtacaattgattgttgaaagagtaggtaatc-attgaattaacgtaa 202  Q
    ||||||||||||||| | | ||||| |||||||||| |||||| | ||||| |||||||||    
T  13744605 attagggttaatttgcaaagttgatcgttgaaagagaaggtaaactattgatttaacgtaa 13744665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 202
Target Start/End: Original strand, 33556104 - 33556262
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgtt---ttgttaattttgatgttata 139  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||          | |||||||||||||||   |||||| ||| |||||||||    
T  33556104 ctaagataagggtgggactagctttctctaataatgggttgtatgattctaaaaag----gggtttaacatgttgttgttttgttagttt-gatgttata 33556198  T
Q  140 gaaattagggttaatttgtacaattgattgttgaaagagtaggtaa--tcattgaattaacgtaa 202  Q
    |||||||||||||| ||| | |||||||||||||||||||||||||   ||||||||||||||||    
T  33556199 gaaattagggttaa-ttgaaaaattgattgttgaaagagtaggtaaatccattgaattaacgtaa 33556262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 202
Target Start/End: Original strand, 36300655 - 36300796
Alignment:
Q  58 gactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgttttgttaattttgatgttatagaaattagggttaatttg 157  Q
    |||||||||||||||||||||||||||||||||||          | |||||||||||| |||||||| |||||||| ||||| |||||||||||| |||    
T  36300655 gactagctttctctaataatgggttgtatgattctaaaaag----gggtttaacatgttattttgttagttttgatgatataggaattagggttaaattg 36300750  T
Q  158 tacaattgattgttgaaagagtaggtaat-cattgaattaacgtaa 202  Q
     | |||| | ||||||||||||||||||| ||||||||||||||||    
T  36300751 caaaattaactgttgaaagagtaggtaatccattgaattaacgtaa 36300796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 58412 - 58532
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgttttgttaattttgatgttatagaa 142  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||          | ||||||||||||||||||||| ||||||||||| ||||    
T  58412 ctaaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaag----gggtttaacatgttgttttgttagttttgatgttaaagaa 58507  T
Q  143 attagggttaatttgtacaattgat 167  Q
    ||||||||||| ||| | |||||||    
T  58508 attagggttaaattgcaaaattgat 58532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 202
Target Start/End: Original strand, 15700750 - 15700890
Alignment:
Q  59 actagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgtt-ttgttaattttgatgttatagaaattagggttaatttg 157  Q
    ||||||||||||||||||||||||||||| ||||          | ||||||||||| ||| |||||| |||| |||||||||||||||||||||| |||    
T  15700750 actagctttctctaataatgggttgtatggttctaaaaag----gggtttaacatgtagttgttgttagttttaatgttatagaaattagggttaa-ttg 15700844  T
Q  158 tacaattgattgttgaaagagtaggtaatc-attgaattaacgtaa 202  Q
     | ||||| ||||||||||||||||||| | |||||||||||||||    
T  15700845 caaaattggttgttgaaagagtaggtaaactattgaattaacgtaa 15700890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 25943319 - 25943163
Alignment:
Q  44 taagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacat---gttgttttgttaattttgatgttatag 140  Q
    |||| ||||||| ||||||||||||||||||||||||||||||| || |          | |||||||||   |||||||||| | ||||||||||||||    
T  25943319 taaggtaagggtgggactagctttctctaataatgggttgtatgtttttgaaaag----gggtttaacatttcgttgttttgt-agttttgatgttatag 25943225  T
Q  141 aaattagggttaatttgtacaattgattgttgaaagagtaggt-aatcattgaattaacgtaa 202  Q
    ||||||||||||| ||| | ||||||||||||||||||||||| || ||||||||||| ||||    
T  25943224 aaattagggttaa-ttgcaaaattgattgttgaaagagtaggtaaaccattgaattaatgtaa 25943163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 8488081 - 8488142
Alignment:
Q  31 cgatcgattatcctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    |||||||||| |||||| ||||||| |||||| ||||||||||||||||||||||| |||||    
T  8488081 cgatcgattaacctaaggtaagggtgggactaactttctctaataatgggttgtataattct 8488142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 8513740 - 8513801
Alignment:
Q  31 cgatcgattatcctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    |||||||||| |||||| ||||||| |||||| ||||||||||||||||||||||| |||||    
T  8513740 cgatcgattaacctaaggtaagggtgggactaactttctctaataatgggttgtataattct 8513801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 13315081 - 13315219
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgttttgttaattttgatgttatagaa 142  Q
    ||||| |||||||  ||||| |||||||||||||||||||||||||||||          | |||||||||||||||||||||||||||||  |  ||||    
T  13315081 ctaaggtaagggtgagactatctttctctaataatgggttgtatgattct----gaaaaggggtttaacatgttgttttgttaattttgattgttgagaa 13315176  T
Q  143 attagggttaatttgtacaattgattgttgaaagagtaggtaa 185  Q
    |||||| ||      || |||||||||||||||||||||||||    
T  13315177 attaggttttgaaattaaaattgattgttgaaagagtaggtaa 13315219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 167
Target Start/End: Complemental strand, 15720831 - 15720709
Alignment:
Q  44 taagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgtt---ttgttaattttgatgttatag 140  Q
    |||| ||| ||| ||||||||||||||| ||||||||||||||||||||          | |||||||||||||||   |||||| ||||||||||||||    
T  15720831 taaggtaaaggtgggactagctttctctcataatgggttgtatgattctaaaaag----gggtttaacatgttgttgttttgttagttttgatgttatag 15720736  T
Q  141 aaattagggttaatttgtacaattgat 167  Q
    |||||| |||||| ||| | |||||||    
T  15720735 aaattatggttaaattgcaaaattgat 15720709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 16250342 - 16250383
Alignment:
Q  161 aattgattgttgaaagagtaggtaatcattgaattaacgtaa 202  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  16250342 aattgattgttgaaagagtaggtaaccattgaattaacgtaa 16250383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 20252181 - 20252230
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| |||||||||||||||||||||||||||||| ||||||| |||||    
T  20252181 ctaaggtaagggtaggactagctttctctaataatgagttgtataattct 20252230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 38299801 - 38299752
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  38299801 ctaaggtaagggtgggactagctttctctaataatgggttgtataattct 38299752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 708428 - 708477
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| || |||| |||||||||||||||||||||||||||||| |||||    
T  708428 ctaaggtaggggtgggactagctttctctaataatgggttgtataattct 708477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 15575648 - 15575697
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| || |||| |||||||||||||||||||||||||||||| |||||    
T  15575648 ctaaggtaggggtgggactagctttctctaataatgggttgtataattct 15575697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 18874664 - 18874713
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| |||||||  ||||||||||||||||||||||||||||| |||||    
T  18874664 ctaaggtaagggtgagactagctttctctaataatgggttgtataattct 18874713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 19195664 - 19195615
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||| |||||    
T  19195664 ctaaggtaagggtgggactagctttctctaataatgagttgtataattct 19195615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 47095505 - 47095456
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| ||||||||||||||||||||||||||| || |||||    
T  47095505 ctaaggtaagggtgggactagctttctctaataatgggttgaataattct 47095456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 43276744 - 43276792
Alignment:
Q  44 taagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    |||| ||||||| |||||| ||||||||||||||||||||||| |||||    
T  43276744 taaggtaagggtgggactaactttctctaataatgggttgtataattct 43276792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 43745710 - 43745666
Alignment:
Q  42 cctaagataagggtaggactagctttctctaataatgggttgtat 86  Q
    |||||| ||||||| |||||||||||||||||||||| |||||||    
T  43745710 cctaaggtaagggtgggactagctttctctaataatgagttgtat 43745666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 92
Target Start/End: Original strand, 15700897 - 15700931
Alignment:
Q  58 gactagctttctctaataatgggttgtatgattct 92  Q
    ||||||||||||||||||||| |||||||||||||    
T  15700897 gactagctttctctaataatgagttgtatgattct 15700931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 48212725 - 48212775
Alignment:
Q  42 cctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    |||||| |||||||  ||||||||||||| |||||| ||||||||||||||    
T  48212725 cctaaggtaagggtgtgactagctttctccaataataggttgtatgattct 48212775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 3287797 - 3287748
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| |||||||  |||||||||||||||||||| |||||||| |||||    
T  3287797 ctaaggtaagggtgagactagctttctctaataataggttgtataattct 3287748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 15575723 - 15575755
Alignment:
Q  120 ttgttaattttgatgttatagaaattagggtta 152  Q
    |||||| ||||||||||||||||||||||||||    
T  15575723 ttgttagttttgatgttatagaaattagggtta 15575755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 48212803 - 48212835
Alignment:
Q  120 ttgttaattttgatgttatagaaattagggtta 152  Q
    |||||| ||||||||||||||||||||||||||    
T  48212803 ttgttagttttgatgttatagaaattagggtta 48212835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 43 - 202
Target Start/End: Original strand, 127342 - 127501
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgtt---gttttgttaattttgatgttata 139  Q
    ||||| ||||||| ||||||||||||||||||||||| ||||||||||||          | ||||||||||||   ||||||||| |||||||||||||    
T  127342 ctaaggtaagggtgggactagctttctctaataatggattgtatgattctaaaaag----gggtttaacatgttgttgttttgttagttttgatgttata 127437  T
Q  140 gaaattagggttaatttgtacaattgattgttgaaagagtaggt-aatcattgaattaacgtaa 202  Q
    || |||||||||| |||| | ||||||||||||||||||||||| || ||||||||||||||||    
T  127438 gagattagggttactttgcaaaattgattgttgaaagagtaggtaaaccattgaattaacgtaa 127501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 175
Target Start/End: Original strand, 28344987 - 28345115
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgttttgttaattttgatgttatagaa 142  Q
    |||||||||||||  ||||||||||||||||||||||| |||||||||||          | ||||||||||||||||||||| ||| ||||||||||||    
T  28344987 ctaagataagggtgtgactagctttctctaataatgggctgtatgattctaaaaag----gggtttaacatgttgttttgttagtttcgatgttatagaa 28345082  T
Q  143 attagggttaatttgtacaattgattgttgaaa 175  Q
    ||||||||||||||| | |||||||||||||||    
T  28345083 attagggttaatttgcaaaattgattgttgaaa 28345115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 25584179 - 25584251
Alignment:
Q  113 tgttgttttgttaattttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaa 185  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25584179 tgttgttttgttagttttgatgttatagaaattagggttaatttgtagaattgattgttgaaagagtaggtaa 25584251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 187
Target Start/End: Original strand, 149500 - 149646
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgt---tttgttaattttgatgttata 139  Q
    ||||| ||||||| | |||||||||||||||||||| ||||||| |||||          | ||||||||||||||   ||||||| |||||||||||||    
T  149500 ctaaggtaagggtggaactagctttctctaataatgagttgtataattctaaaaaaaaggg-gtttaacatgttgtcgttttgttagttttgatgttata 149598  T
Q  140 gaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc 187  Q
    ||||||||||||      || |||||||||||||||||||||||||||    
T  149599 gaaattagggtttgaaattaaaattgattgttgaaagagtaggtaatc 149646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 23801549 - 23801500
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  23801549 ctaaggtaagggtgggactagctttctctaataatgggttgtatgattct 23801500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 21315475 - 21315524
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  21315475 ctaaggtaagggtgggactagctttctctaataatgggttgtataattct 21315524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 21335265 - 21335314
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  21335265 ctaaggtaagggtgggactagctttctctaataatgggttgtataattct 21335314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 23610680 - 23610636
Alignment:
Q  42 cctaagataagggtaggactagctttctctaataatgggttgtat 86  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||    
T  23610680 cctaaggtaagggtgggactagctttctctaataatgggttgtat 23610636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 34491312 - 34491401
Alignment:
Q  113 tgttgttttgttaattttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaa--tcattgaattaacgtaa 202  Q
    ||||||||||| | ||||||||||||| || |||||||||| ||| | ||||||||||| |||||||| ||||   ||||||||||||||||    
T  34491312 tgttgttttgt-agttttgatgttataaaatttagggttaa-ttgcaaaattgattgttaaaagagtaagtaaatccattgaattaacgtaa 34491401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 21369346 - 21369297
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| |||| |||||||||||| |||||||||||| |||||    
T  21369346 ctaaggtaagggtgggacaagctttctctaacaatgggttgtataattct 21369297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 28652626 - 28652658
Alignment:
Q  120 ttgttaattttgatgttatagaaattagggtta 152  Q
    |||||| ||||||||||||||||||||||||||    
T  28652626 ttgttagttttgatgttatagaaattagggtta 28652658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 43 - 202
Target Start/End: Complemental strand, 10446270 - 10446108
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgtt---ttgttaattttgatgttata 139  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||          | |||||||||||||||   |||||| ||| |||||||||    
T  10446270 ctaaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaag----gggtttaacatgttgttgttttgttagtttcgatgttata 10446175  T
Q  140 gaaattagggttaatttgtacaattgattgttgaaag---agtaggt-aatcattgaattaacgtaa 202  Q
    |||||||||||||||||| | ||||||||||||||||   ||||||| || ||||||||||||||||    
T  10446174 gaaattagggttaatttgcaaaattgattgttgaaagatcagtaggtaaagcattgaattaacgtaa 10446108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 1818924 - 1818848
Alignment:
Q  127 ttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaa-tcattgaattaacgtaa 202  Q
    ||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||| |||||||||||||||||    
T  1818924 ttttgatgttatagaaattagggttaaattgcaaaattgattgttgaaagagtaggtaattcattgaattaacgtaa 1818848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 21683073 - 21683122
Alignment:
Q  42 cctaagataagggtaggactagctttctctaataatgggttgtatgattc 91  Q
    |||||| ||||||| |||||||||||||||||||||||||||||| ||||    
T  21683073 cctaaggtaagggtgggactagctttctctaataatgggttgtataattc 21683122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 29045324 - 29045281
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtat 86  Q
    ||||| |||||||  |||||||||||||||||||||||||||||    
T  29045324 ctaaggtaagggtgagactagctttctctaataatgggttgtat 29045281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 15998968 - 15998911
Alignment:
Q  17 agaggaagggctgccgatcgattatcctaagataagggtaggactagctttctctaat 74  Q
    ||||||||||||  || |||||||||||||| |||||||  ||||| |||||||||||    
T  15998968 agaggaagggctatcggtcgattatcctaaggtaagggtgagactaactttctctaat 15998911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 19825485 - 19825534
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| |||||||  |||||||||||||||||||||||||| || |||||    
T  19825485 ctaaggtaagggtgagactagctttctctaataatgggttgcataattct 19825534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 23658142 - 23658093
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| |||||||||||| |||||||| |||||||| |||||    
T  23658142 ctaaggtaagggtgggactagctttccctaataataggttgtataattct 23658093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 15998867 - 15998835
Alignment:
Q  120 ttgttaattttgatgttatagaaattagggtta 152  Q
    |||||| ||||||||||||||||||||||||||    
T  15998867 ttgttagttttgatgttatagaaattagggtta 15998835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 20410512 - 20410560
Alignment:
Q  44 taagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    |||| ||||||| | | |||||||||||||||||||||||||| |||||    
T  20410512 taaggtaagggtggaaatagctttctctaataatgggttgtataattct 20410560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 24506196 - 24506255
Alignment:
Q  127 ttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc 187  Q
    |||||||||||||||| ||||| |||| ||||| | || ||||||||||| ||||||||||    
T  24506196 ttttgatgttatagaagttaggtttaaattgta-atttaattgttgaaagtgtaggtaatc 24506255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 185
Target Start/End: Complemental strand, 19909 - 19769
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgtt---ttgttaattttgatgttata 139  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||          | |||||||||||||||   |||||| |||||||||||||    
T  19909 ctaaggtaagggtaggactagatttctctaataatgggttgtatgattctaaaaag----gggtttaacatgttgttgttttgttagttttgatgttata 19814  T
Q  140 gaaattagggttaatttgtacaattgattgttgaaagagtaggtaa 185  Q
    |||||||||||||| ||| | ||||| |||||||||||||||||||    
T  19813 gaaattagggttaa-ttgcaaaattggttgttgaaagagtaggtaa 19769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 5507 - 5458
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| |||||| ||||||||||||||| ||||||| |||||    
T  5507 ctaaggtaagggtgggactacctttctctaataatgagttgtataattct 5458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 11668 - 11620
Alignment:
Q  44 taagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    |||||||||||| ||||||  ||||||||| |||||||||||| |||||    
T  11668 taagataagggtgggactaaatttctctaaaaatgggttgtataattct 11620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 202
Target Start/End: Original strand, 21398643 - 21398803
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgtt---gttttgttaattttgatgttata 139  Q
    ||||| ||||||| ||| ||||||||||||||||||||||||||||||||          | ||||||||||||   ||||||||| |||||||||||||    
T  21398643 ctaaggtaagggtgggattagctttctctaataatgggttgtatgattctaaaaagg---gggtttaacatgtttttgttttgttagttttgatgttata 21398739  T
Q  140 gaaattagggttaatttgtacaattgattgttgaaagagtaggtaa--tcattgaattaacgtaa 202  Q
    |||||||||||||| ||| | ||||| |||||||||||||||||||   ||||||||||||||||    
T  21398740 gaaattagggttaa-ttgcaaaattggttgttgaaagagtaggtaaatccattgaattaacgtaa 21398803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 22111962 - 22111873
Alignment:
Q  113 tgttgttttgttaattttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc-attgaattaacgtaa 202  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||||| | || ||||||||||||    
T  22111962 tgttgttttgttagttttgatgttatagaaattagggttaa-ttgcaaaattggttgttgaaagagtaggtaaacaatcgaattaacgtaa 22111873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 32607315 - 32607438
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaaca---tgttgttttgttaattttgatgttata 139  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||          | ||||||||   ||||||||||||| |||||||||||||    
T  32607315 ctaaggtaagggtgggactagctttctctaataatgggttgtatgattct----aaaaaggggtttaacatgttgttgttttgttagttttgatgttata 32607410  T
Q  140 gaaattagggttaatttgtacaattgat 167  Q
    |||||||| ||||| ||| | |||||||    
T  32607411 gaaattagagttaaattgcaaaattgat 32607438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 1626999 - 1627074
Alignment:
Q  127 ttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggt-aatcattgaattaacgtaa 202  Q
    |||||||||| || ||||||| ||| ||||| | ||||||||||||||||||||||| || ||||||||||||||||    
T  1626999 ttttgatgttgta-aaattagagtttatttgcaaaattgattgttgaaagagtaggtaaaccattgaattaacgtaa 1627074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 23199207 - 23199255
Alignment:
Q  44 taagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    |||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  23199207 taaggtaagggtgggactagctttctctaataatgggttgtataattct 23199255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 16063804 - 16063755
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| |||||| ||||||||||||||||||||||| |||||    
T  16063804 ctaaggtaagggtgggactacctttctctaataatgggttgtataattct 16063755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 18744927 - 18744878
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| |||||| ||||||||||||||||||||||| |||||    
T  18744927 ctaaggtaagggtgggactaactttctctaataatgggttgtataattct 18744878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 21504111 - 21504055
Alignment:
Q  127 ttttgatgttatagaaattagggtt-aatttgtacaattgattgttgaaagagtaggt 183  Q
    ||||||||||||||||||||||||| |||||| | |||| ||||||||||||||||||    
T  21504111 ttttgatgttatagaaattagggttaaatttgca-aattcattgttgaaagagtaggt 21504055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 1627072 - 1627115
Alignment:
Q  49 taagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||||| |||||||||||||||||||||| ||||||| |||||    
T  1627072 taagggtgggactagctttctctaataatgagttgtataattct 1627115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 1627142 - 1627174
Alignment:
Q  120 ttgttaattttgatgttatagaaattagggtta 152  Q
    |||||| ||||||||||||||||||||||||||    
T  1627142 ttgttagttttgatgttatagaaattagggtta 1627174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 12464 - 12381
Alignment:
Q  120 ttgttaattttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggt-aatcattgaattaacgtaa 202  Q
    |||||| ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| |||||||||||||||||||    
T  12464 ttgttagttttgatgttatagaaattagggtttatttgcaaaattgattgttgaaagagtaggtaaatcattgaattaacgtaa 12381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 10999 - 10843
Alignment:
Q  44 taagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgtt---ttgttaattttgatgttatag 140  Q
    |||| ||||||| | ||||||||||||||||||||||||||||||||||          | |||||||||||||||   |||||| ||||||||||||||    
T  10999 taaggtaagggtggaactagctttctctaataatgggttgtatgattctaaaaa-----gggtttaacatgttgttgttttgttagttttgatgttatag 10905  T
Q  141 aaattagggttaatttgtacaattgattgttgaaagagtaggtaatc-attgaattaacgtaa 202  Q
    ||||||||||||| ||| | ||||| ||||||||| ||||||||| | |||||||||| ||||    
T  10904 aaattagggttaa-ttgcaaaattggttgttgaaaaagtaggtaaactattgaattaatgtaa 10843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 202
Target Start/End: Complemental strand, 75990 - 75831
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgtt---ttgttaattttgatgttata 139  Q
    ||||| ||||||| |||||||||||||| |||||||||||||||||||||          | |||||||||||||||   || ||| |||||||||||||    
T  75990 ctaaggtaagggtgggactagctttctccaataatgggttgtatgattctaaaaag----gggtttaacatgttgttgttttattagttttgatgttata 75895  T
Q  140 gaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc-attgaattaacgtaa 202  Q
      |||||||| ||||||| | | ||||||||||||||||||||||| | ||||| |||||||||    
T  75894 agaattagggataatttgcaaagttgattgttgaaagagtaggtaaactattgagttaacgtaa 75831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 201
Target Start/End: Complemental strand, 73139 - 72982
Alignment:
Q  44 taagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgtt---ttgttaattttgatgttatag 140  Q
    |||| ||||||| |||||| ||||||||||||||| |||||||||||||          | |||||||||||||||   || ||| |||| ||||||||     
T  73139 taaggtaagggtgggactaactttctctaataatgagttgtatgattctaaaaag----gggtttaacatgttgttgttttattagtttttatgttataa 73044  T
Q  141 aaattagggttaatttgtacaattgattgttgaaagagtaggtaa-tcattgaattaacgta 201  Q
     |||||||||||||||| | | |||||||||||||||||||||||  |||||||||||||||    
T  73043 gaattagggttaatttgcaaagttgattgttgaaagagtaggtaagccattgaattaacgta 72982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 110288 - 110219
Alignment:
Q  134 gttatagaaattagggttaatttgtacaattgattgttgaaagagtaggt-aatcattgaattaacgtaa 202  Q
    |||||||||||||||||| ||||| | |||||||| |||||||||||||| || ||||||||||||||||    
T  110288 gttatagaaattagggtttatttgcaaaattgattattgaaagagtaggtaaaccattgaattaacgtaa 110219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 111425 - 111364
Alignment:
Q  31 cgatcgattatcctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||||||||  ||||| ||||||| || |||||||||||||||||||||||||||||||||    
T  111425 cgatcgattaatctaaggtaagggtggggctagctttctctaataatgggttgtatgattct 111364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 66071 - 66120
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| ||||||| ||||| |||||||||||||||| |||||    
T  66071 ctaaggtaagggtgggactagatttctttaataatgggttgtataattct 66120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0439 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 12308 - 12236
Alignment:
Q  103 gagtttaacatgttg---ttttgttaattttgatgttatagaaattagggttaatttgtacaattgattgttg 172  Q
    |||||||||||||||   |||||||| |||||||||||||||||||| |||||||||||| ||||||||||||    
T  12308 gagtttaacatgttgaagttttgttagttttgatgttatagaaattaaggttaatttgtagaattgattgttg 12236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 8814 - 8873
Alignment:
Q  113 tgttgttttgttaattttgatgttatagaaattagggttaatttgtacaattgattgttg 172  Q
    ||||||||||||| |||||||||||||||||||||||||||||| || |||||| |||||    
T  8814 tgttgttttgttagttttgatgttatagaaattagggttaatttttagaattgactgttg 8873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 8745 - 8794
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| |||||||  ||||||||| |||||||||||||||||||||||||    
T  8745 ctaaggtaagggtgagactagcttactctaataatgggttgtatgattct 8794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0676 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 187
Target Start/End: Complemental strand, 2811 - 2726
Alignment:
Q  105 gtttaacatgttgt---tttgttaattttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc 187  Q
    ||||||||||||||   ||||||| |||||||||||||||||||||||||      || |||||||||||||||||||||||||||    
T  2811 gtttaacatgttgtcgttttgttacttttgatgttatagaaattagggtttgaaattaaaattgattgttgaaagagtaggtaatc 2726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0676; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 2934 - 2885
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  2934 ctaaggtaagggtgggactagctttctctaataatgggttgtataattct 2885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 23587 - 23544
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtat 86  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  23587 ctaaggtaagggtaggactagctttctctaataatgggttgtat 23544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 40145 - 40037
Alignment:
Q  58 gactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgtt---ttgttaattttgatgttatagaaattagggttaat 154  Q
    ||||| |||||||||||||||||||||||||||||          | |||||||||||||||   |||||| |||||||||||||||||||||||||||     
T  40145 gactaactttctctaataatgggttgtatgattctaaaaag----gggtttaacatgttgttgttttgttagttttgatgttatagaaattagggttaaa 40050  T
Q  155 ttgtacaattgat 167  Q
    ||| | |||||||    
T  40049 ttgcagaattgat 40037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0730 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0730
Description:

Target: scaffold0730; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 186
Target Start/End: Original strand, 6518 - 6643
Alignment:
Q  57 ggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaacatgttgttttgttaattttgatgttatagaaattagggttaattt 156  Q
    |||||| |||||||||||||||||||||||||||||          | |||||||||||||||||||||||||||||  |  |||||||||| ||         
T  6518 ggactacctttctctaataatgggttgtatgattct----gaaaaggggtttaacatgttgttttgttaattttgattgttgagaaattaggttttgaaa 6613  T
Q  157 gtacaattgattgttgaaagagtaggtaat 186  Q
     || ||||||||||||||||||||||||||    
T  6614 ttaaaattgattgttgaaagagtaggtaat 6643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1766 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1766
Description:

Target: scaffold1766; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 669 - 726
Alignment:
Q  17 agaggaagggctgccgatcgattatcctaagataagggtaggactagctttctctaat 74  Q
    ||||||||||||||||||| ||||||||||| || |||| |||||| |||||||||||    
T  669 agaggaagggctgccgatcaattatcctaaggtaggggtgggactaactttctctaat 726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 3421 - 3470
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| |||||||||||||||||||||| |||||||||||||    
T  3421 ctaaggtaagggtgggactagctttctctaataatgcgttgtatgattct 3470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 3496 - 3528
Alignment:
Q  120 ttgttaattttgatgttatagaaattagggtta 152  Q
    |||||| ||||||||||||||||||||||||||    
T  3496 ttgttagttttgatgttatagaaattagggtta 3528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 168972 - 169029
Alignment:
Q  17 agaggaagggctgccgatcgattatcctaagataagggtaggactagctttctctaat 74  Q
    ||||||||||||||||||| ||||||||||| || |||| |||||| |||||||||||    
T  168972 agaggaagggctgccgatcaattatcctaaggtaggggtgggactaactttctctaat 169029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1939 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1939
Description:

Target: scaffold1939; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 99 - 39
Alignment:
Q  127 ttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc 187  Q
    |||||||||||||||| ||||||||||  |  | |||||||||||||||||||||||||||    
T  99 ttttgatgttatagaagttagggttaaaattgaaaattgattgttgaaagagtaggtaatc 39  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 2454 - 2502
Alignment:
Q  44 taagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    |||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  2454 taaggtaagggtgggactagctttctctaataatgggttgtataattct 2502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 5685 - 5637
Alignment:
Q  44 taagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    |||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  5685 taaggtaagggtgggactagctttctctaataatgggttgtataattct 5637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 11160 - 11208
Alignment:
Q  44 taagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    |||| ||||| | ||||||||||||||||||||||||||||||||||||    
T  11160 taaggtaaggatgggactagctttctctaataatgggttgtatgattct 11208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 11228 - 11267
Alignment:
Q  113 tgttgttttgttaattttgatgttatagaaattagggtta 152  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  11228 tgttgttttgttagttttgatgttatataaattagggtta 11267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 14019 - 13960
Alignment:
Q  25 ggctgccgatcgattatcctaagataagggtaggactagctttctctaataatgggttgta 85  Q
    |||||||||||| | ||| |||| ||||||| |||||||||||||||||||||||||||||    
T  14019 ggctgccgatcgttaatc-taaggtaagggtgggactagctttctctaataatgggttgta 13960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 188
Target Start/End: Complemental strand, 8897 - 8752
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattctnnnnnnnnnngagtttaaca---tgttgttttgttaattttgatgttata 139  Q
    ||||| ||||||| ||||||||||| ||||||||||| ||||||||||||          | ||||||||   ||||||||||||||||||||| ||  |    
T  8897 ctaagttaagggtgggactagctttatctaataatggattgtatgattct---gaaaagggggtttaacatgttgttgttttgttaattttgatttttga 8801  T
Q  140 gaaattagggttaatttgtacaattgattgttgaaagagtaggtaatca 188  Q
    ||||||||| ||      || ||||||||||||||||||||||||||||    
T  8800 gaaattaggttttgaaattaaaattgattgttgaaagagtaggtaatca 8752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 17077 - 17019
Alignment:
Q  128 tttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc 187  Q
    |||||| |||||||||||||| |||||||| | | |||||||||||||||||||||||||    
T  17077 tttgatattatagaaattaggtttaatttgca-atttgattgttgaaagagtaggtaatc 17019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 26608 - 26550
Alignment:
Q  128 tttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc 187  Q
    |||||| |||||||||||||| |||||||| | | |||||||||||||||||||||||||    
T  26608 tttgatattatagaaattaggtttaatttgca-atttgattgttgaaagagtaggtaatc 26550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 18329 - 18279
Alignment:
Q  42 cctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    |||||| |||||||  ||||||||||||||||||||||||||||| |||||    
T  18329 cctaaggtaagggtgtgactagctttctctaataatgggttgtataattct 18279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1186 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold1186
Description:

Target: scaffold1186; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 2073 - 2024
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| |||||||  ||||||||||||||||||||||||||||| |||||    
T  2073 ctaaggtaagggtgagactagctttctctaataatgggttgtataattct 2024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1186; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 1998 - 1966
Alignment:
Q  120 ttgttaattttgatgttatagaaattagggtta 152  Q
    |||||| ||||||||||||||||||||||||||    
T  1998 ttgttagttttgatgttatagaaattagggtta 1966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 2300 - 2251
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| ||||||||||||| |||||||||||||||| |||||    
T  2300 ctaaggtaagggtgggactagctttctataataatgggttgtataattct 2251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 14585 - 14634
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| |||||||  ||||||||||||||||||||||||||||| |||||    
T  14585 ctaaggtaagggtgagactagctttctctaataatgggttgtataattct 14634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 23643 - 23692
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| |||||||  ||||||||||||||||||||||||||||| |||||    
T  23643 ctaaggtaagggtgagactagctttctctaataatgggttgtataattct 23692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 68725 - 68774
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| |||||| ||||||||||||||||||| |||||||||    
T  68725 ctaaggtaagggtgggactacctttctctaataatgggttatatgattct 68774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 186195 - 186244
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| |||||||  ||||||||||||||||||||||||||||| |||||    
T  186195 ctaaggtaagggtgagactagctttctctaataatgggttgtataattct 186244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 186270 - 186302
Alignment:
Q  120 ttgttaattttgatgttatagaaattagggtta 152  Q
    |||||| ||||||||||||||||||||||||||    
T  186270 ttgttagttttgatgttatagaaattagggtta 186302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 22463 - 22519
Alignment:
Q  8 gagaagcagagaggaagggctgccgatcgattatcctaagataagggtaggactagc 64  Q
    ||||| || ||||||||||||||||||||||||| ||||| |||||||  |||||||    
T  22463 gagaaccaaagaggaagggctgccgatcgattattctaaggtaagggtgagactagc 22519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 1054 - 972
Alignment:
Q  120 ttgttaattttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggt-aatcattgaattaacgtaa 202  Q
    |||||| |||||||||| ||||||||| |||||||| | | ||||||||||| ||| ||||||| ||| || ||||||||||||    
T  1054 ttgttagttttgatgttttagaaattatggttaatt-gcaaaattgattgttaaaatagtaggtaaattatcgaattaacgtaa 972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 1128 - 1080
Alignment:
Q  44 taagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    |||| |||||||  |||||||||||||||||||||| |||||| |||||    
T  1128 taaggtaagggtgagactagctttctctaataatggattgtataattct 1080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 18639 - 18681
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgta 85  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||    
T  18639 ctaaggtaagggtgggactagctttctctaataatgagttgta 18681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 17520 - 17569
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| ||||||||||| ||||||||||| |||||| |||||    
T  17520 ctaaggtaagggtcggactagctttttctaataatggattgtataattct 17569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 6471 - 6430
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgt 84  Q
    ||||| |||||||| ||||||||||||||||||||| |||||    
T  6471 ctaaggtaagggtaagactagctttctctaataatgagttgt 6430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 35185 - 35234
Alignment:
Q  43 ctaagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    ||||| ||||||| | |||||||||| ||||||||||||||||| |||||    
T  35185 ctaaggtaagggtggtactagctttccctaataatgggttgtataattct 35234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 68376 - 68331
Alignment:
Q  17 agaggaagggctgccgatcgattatcctaagataagggtaggacta 62  Q
    ||||||||||||| |||||||||||| |||| ||||||| ||||||    
T  68376 agaggaagggctgtcgatcgattatcttaaggtaagggtgggacta 68331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 4988 - 4941
Alignment:
Q  44 taagataagggtaggactagctttctctaataatgggttgtatgattct 92  Q
    |||| ||||||| ||||||||||||||||||||| |||||||| |||||    
T  4988 taaggtaagggtgggactagctttctctaataat-ggttgtataattct 4941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 15689 - 15721
Alignment:
Q  120 ttgttaattttgatgttatagaaattagggtta 152  Q
    |||||| ||||||||||||||||||||||||||    
T  15689 ttgttagttttgatgttatagaaattagggtta 15721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 18014 - 18046
Alignment:
Q  120 ttgttaattttgatgttatagaaattagggtta 152  Q
    |||||| ||||||||||||||||||||||||||    
T  18014 ttgttagttttgatgttatagaaattagggtta 18046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University