View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_low_58 (Length: 262)
Name: NF8349_low_58
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 43503315 - 43503566
Alignment:
| Q |
1 |
cttgttcgtccgattcatgtgtctttttcctctcttcctctgccaatatgtcaatccacctcttggccatgtaagacttgatggcttggacaccttcatt |
100 |
Q |
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| T |
43503315 |
cttgttcttccgattcatgtgtctttttcctctcttcctctgccaatatatcaatccacctcttggccatgtaagacttgatggcttggacaccttcatt |
43503414 |
T |
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| Q |
101 |
tacagtctccataggtggcaattcaatagggttctgctctaagtttagcttgattaaactatcaaggcggccaaatgtatcaggaagtgcatgaatttga |
200 |
Q |
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| T |
43503415 |
tacaatctccataggtggcaattcaatagggttctgctctaagtttagcttgattaaactatcaaggcggccaaatgtatcaggaagtgcatgaatttga |
43503514 |
T |
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| Q |
201 |
ttgttgctaagatccaattccttgaggctactcagatcaccaaatgtctctg |
252 |
Q |
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| T |
43503515 |
ttgttgctaagatccaattccttgaggctactcaaatcaccaaatgtctctg |
43503566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 252
Target Start/End: Original strand, 34564231 - 34564450
Alignment:
| Q |
33 |
tcttcctctgccaatatgtcaatccacctcttggccatgtaagacttgatggcttggacaccttcatttacagtctccataggtggcaattcaatagggt |
132 |
Q |
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| T |
34564231 |
tcttcctcttccaacatagcaatccacctcttggccataaaagtttttatggcttggaccccttggtttacaatctccactggtggcagttcaagaggat |
34564330 |
T |
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| Q |
133 |
tctgctctaagtttagcttgattaaactatcaaggcggccaaatgtatcaggaagtgcatgaatttgattgttgctaagatccaattccttgaggctact |
232 |
Q |
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| T |
34564331 |
tctgttccaagttgagcttggtcaaattatcaaggcaaccaaatgtatctggaagtgcatgaatctgattattactgacatccaattccttgagattagt |
34564430 |
T |
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| Q |
233 |
cagatcaccaaatgtctctg |
252 |
Q |
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| T |
34564431 |
caattcgccaaatgtctctg |
34564450 |
T |
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