View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8349_low_6 (Length: 611)
Name: NF8349_low_6
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 177; Significance: 4e-95; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 378 - 593
Target Start/End: Complemental strand, 38132793 - 38132577
Alignment:
| Q |
378 |
acacatcaaatatttccacaatcttttactatctgatttgcttttacatgattaatcagataatttgnnnnnnnn-catgtcttcactcaaactcaattt |
476 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38132793 |
acacatcaaatattttcacaatcttttactatctgatttgcttttacatgattaatcagataatttgtttttttttcatgtcttcactcaaactcaattt |
38132694 |
T |
|
| Q |
477 |
aaaagcctttatttcttaaatccatctgtcatccctcactttataagtttcttatagataataaatttttcataacgtacagaacaacaaaattgtattt |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38132693 |
aaaagcctttatttcttaaatccatctgtcatccctcactttataagtttcttatagataataagtttttcataacgtacagaacaacaaaattgtattt |
38132594 |
T |
|
| Q |
577 |
aataatacatctcttat |
593 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
38132593 |
aataatacatctcttat |
38132577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 38139709 - 38139626
Alignment:
| Q |
99 |
ataattgaaagccatggtggtgatccttctccagcttcaacttgtgttcacaa-----ggtacttaaactaacttgaaatgagaact |
180 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||| |||||||||||||||| | ||||||||||||||||||||| ||||| |
|
|
| T |
38139709 |
ataattgaaagccatggtg---atccttctcctgctgcaacttgtgttcacaaaaaaagttacttaaactaacttgaaatgggaact |
38139626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 185 - 269
Target Start/End: Complemental strand, 38133148 - 38133063
Alignment:
| Q |
185 |
tccacccaataatgtccccacgtggcgccacgtcattacattattgttatcatagaagaaaac-aagaagttacttccaaaagcat |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| | |||||| |||||| |||||||| |||| |||||| ||||||||| |
|
|
| T |
38133148 |
tccacccaataatgtccccacgtggcgccaagtcactccattatcaccatcatataagaaaacaaagatgttactctcaaaagcat |
38133063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 486 - 583
Target Start/End: Complemental strand, 38139112 - 38139012
Alignment:
| Q |
486 |
tatttcttaaatccatctgtcatccctcactttataagtttcttataga----taataaatttttcataacgtacagaacaacaaaattgtatttaataa |
581 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||||| || ||||||||| | |||||| ||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
38139112 |
tatttcttaaatttatctgtcttccttcactttaaaa-tttcttataaaaaaataataactttttcataacgtgtggaacaacaaaatagtatttaataa |
38139014 |
T |
|
| Q |
582 |
ta |
583 |
Q |
| |
|
|| |
|
|
| T |
38139013 |
ta |
38139012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University