View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8349_low_63 (Length: 251)

Name: NF8349_low_63
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8349_low_63
NF8349_low_63
[»] scaffold1122 (2 HSPs)
scaffold1122 (84-240)||(955-1111)
scaffold1122 (15-56)||(530-571)
[»] chr5 (3 HSPs)
chr5 (84-240)||(12822951-12823107)
chr5 (15-56)||(12823491-12823532)
chr5 (183-234)||(18750510-18750561)
[»] chr3 (1 HSPs)
chr3 (191-243)||(25781722-25781774)
[»] chr7 (4 HSPs)
chr7 (162-225)||(16245404-16245466)
chr7 (162-223)||(16305552-16305612)
chr7 (191-230)||(5779448-5779487)
chr7 (203-243)||(12866661-12866701)
[»] chr4 (2 HSPs)
chr4 (181-230)||(8011767-8011816)
chr4 (164-212)||(9014788-9014836)
[»] chr1 (1 HSPs)
chr1 (201-240)||(15724279-15724318)
[»] chr8 (1 HSPs)
chr8 (200-236)||(24570214-24570250)


Alignment Details
Target: scaffold1122 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: scaffold1122
Description:

Target: scaffold1122; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 84 - 240
Target Start/End: Original strand, 955 - 1111
Alignment:
Q  84 cagagtaacaaagatatttcaaacgagctacaataaacagtgagttctgctacatcgcttggggaagctaagagaccaagtgatggacaatcttggcaag 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  955 cagagtaacaaagatatttcaaacgagctacaataaacagtgagttctgctacatcgcttggggaagctaaaagaccaagtgatggacaatcttggcaag 1054  T
Q  184 tgtacccaatcattcataagtaataaagtagtaagtaagatcgtctccacaagaatt 240  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  1055 tgtatccaatcattcacaagtaataaagtagtaagtaagaccgtctccacaagaatt 1111  T

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Target: scaffold1122; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 530 - 571
Alignment:
Q  15 actttctaatgttattgatgataggagcatgtgttggttgca 56  Q
    |||||||||  |||||||||||||||||||||||||||||||    
T  530 actttctaacattattgatgataggagcatgtgttggttgca 571  T

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Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 84 - 240
Target Start/End: Complemental strand, 12823107 - 12822951
Alignment:
Q  84 cagagtaacaaagatatttcaaacgagctacaataaacagtgagttctgctacatcgcttggggaagctaagagaccaagtgatggacaatcttggcaag 183  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12823107 cagagtatcaaagatatttcaaacgagctacaataaacagtgagttctgctacatcgcttggggaagctaaaagaccaagtgatggacaatcttggcaag 12823008  T
Q  184 tgtacccaatcattcataagtaataaagtagtaagtaagatcgtctccacaagaatt 240  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  12823007 tgtatccaatcattcacaagtaataaagtagtaagtaagaccgtctccacaagaatt 12822951  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 12823532 - 12823491
Alignment:
Q  15 actttctaatgttattgatgataggagcatgtgttggttgca 56  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  12823532 actttctaacgttattgatgataggagcatgtgttggttgca 12823491  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 18750510 - 18750561
Alignment:
Q  183 gtgtacccaatcattcataagtaataaagtagtaagtaagatcgtctccaca 234  Q
    ||||||| |||| || | ||||||||||||||||||||||||||||||||||    
T  18750510 gtgtaccaaatctttaacaagtaataaagtagtaagtaagatcgtctccaca 18750561  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 25781774 - 25781722
Alignment:
Q  191 aatcattcataagtaataaagtagtaagtaagatcgtctccacaagaattatc 243  Q
    |||||||||||||||||||| |  |||||||||||||||||||| ||||||||    
T  25781774 aatcattcataagtaataaattgataagtaagatcgtctccacatgaattatc 25781722  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 16245466 - 16245404
Alignment:
Q  162 agtgatggacaatcttggcaagtgtacccaatcattcataagtaataaagtagtaagtaagatc 225  Q
    ||||||||||||| ||| |||||||||| |||| | || |||||||||||||||||||||||||    
T  16245466 agtgatggacaattttgccaagtgtaccaaatcct-cacaagtaataaagtagtaagtaagatc 16245404  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 16305552 - 16305612
Alignment:
Q  162 agtgatggacaatcttggcaagtgtacccaatcattcataagtaataaagtagtaagtaaga 223  Q
    ||||||||||||| ||| |||||||||| |||| | || |||||||||||||||||||||||    
T  16305552 agtgatggacaattttgccaagtgtaccaaatcct-cacaagtaataaagtagtaagtaaga 16305612  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 5779448 - 5779487
Alignment:
Q  191 aatcattcataagtaataaagtagtaagtaagatcgtctc 230  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  5779448 aatcattcacaagtaataaagtagtaagtaagattgtctc 5779487  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 12866661 - 12866701
Alignment:
Q  203 gtaataaagtagtaagtaagatcgtctccacaagaattatc 243  Q
    ||||||||||||||||||| ||||||| |||| ||||||||    
T  12866661 gtaataaagtagtaagtaaaatcgtcttcacatgaattatc 12866701  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 8011816 - 8011767
Alignment:
Q  181 aagtgtacccaatcattcataagtaataaagtagtaagtaagatcgtctc 230  Q
    ||||||||| ||||||||| |||  |||||||||||||||||||||||||    
T  8011816 aagtgtaccaaatcattcacaagagataaagtagtaagtaagatcgtctc 8011767  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 9014788 - 9014836
Alignment:
Q  164 tgatggacaatcttggcaagtgtacccaatcattcataagtaataaagt 212  Q
    ||||||||||| |||||||||| |||  |||||||| ||||||||||||    
T  9014788 tgatggacaattttggcaagtgcaccagatcattcacaagtaataaagt 9014836  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 15724318 - 15724279
Alignment:
Q  201 aagtaataaagtagtaagtaagatcgtctccacaagaatt 240  Q
    ||||||||||||||||||||| ||||||||| ||||||||    
T  15724318 aagtaataaagtagtaagtaaaatcgtctccgcaagaatt 15724279  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 24570250 - 24570214
Alignment:
Q  200 taagtaataaagtagtaagtaagatcgtctccacaag 236  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  24570250 taagtaataaagtagtaagtaaaatcatctccacaag 24570214  T

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