View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_low_64 (Length: 251)
Name: NF8349_low_64
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_64 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 40786067 - 40786306
Alignment:
| Q |
11 |
gcagagagaggagtgctgggattcttagtaaacctatttaggactttaagtannnnnnnnnnnnnnatcaagaataaatatttttctatgttgttaaatt |
110 |
Q |
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| T |
40786067 |
gcagagagaggaatgctgggattcttagtaaacctatttaggactt-aagtattttttatttttttatcaagaataaatatttttctatgttgttaaatt |
40786165 |
T |
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| Q |
111 |
aggaacactagttgttgtgagaggatccattgtacatattttgatttggaattggaggttatgttatattcaactctcattatcatcatataaagttcat |
210 |
Q |
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| T |
40786166 |
aggaacactagttgttgtgagaggatccattgtacatattttgatttggaattggaggttatgttatattcaactctcattatcatcatataaagttcat |
40786265 |
T |
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| Q |
211 |
gttacatatggtgaaactcatcacgttaatttgtttcactc |
251 |
Q |
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| T |
40786266 |
gttacatatggtgaaactcatcacgttaatttgtttcactc |
40786306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 40793882 - 40793943
Alignment:
| Q |
80 |
aagaataaatatttttctatgttgttaaattaggaacactagttgttgtgagaggatccattgtaca |
146 |
Q |
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| T |
40793882 |
aagaataaataattttccatgttgttaaatttggaacactagttgt-----gaggatccattgtaca |
40793943 |
T |
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