View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8349_low_73 (Length: 240)

Name: NF8349_low_73
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8349_low_73
NF8349_low_73
[»] chr7 (5 HSPs)
chr7 (18-240)||(2590530-2590752)
chr7 (18-142)||(10300590-10300715)
chr7 (146-233)||(2617210-2617298)
chr7 (202-237)||(10300717-10300752)
chr7 (146-222)||(2603617-2603693)
[»] chr1 (1 HSPs)
chr1 (18-240)||(22223273-22223489)


Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 2590530 - 2590752
Alignment:
Q  18 aagaaaataatacttcaatgattattaaaataaatgtgactttaagtcaccttagcacctatacaggtagaaactaactgttacatccatgtgcctctaa 117  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  2590530 aagaaaataatacttcaatgattattaaaataaatgtcaccttaagtcaccttagcacctgtacaggtagaaactaactgttacatccatgtgcatctaa 2590629  T
Q  118 gtcacttgataactgattagttgacatatagaaatggagacaataaggacagaaaaggatctgatattctaaatattcaaatcaaattgtatgattgtaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2590630 gtcacttgataactgattagttgacatatagaaatggagacaataaggacagaaaaggatctgatattctaaatattcaaatcaaattgtatgattgtaa 2590729  T
Q  218 atgaagggttacaacaaatatat 240  Q
    |||||||||||||||||||||||    
T  2590730 atgaagggttacaacaaatatat 2590752  T

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Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 10300590 - 10300715
Alignment:
Q  18 aagaaaataatacttcaatgattattaaaataaatgtgactttaagtcaccttagcacctatacaggtagaaactaactgttacatccatgtgcctctaa 117  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||  ||||||||||||||||| ||    
T  10300590 aagaaaataatacttcaatgattattaaaataaatgtcactttaagtcaccttagcacctctacaggtagaaaataacatttacatccatgtgcctccaa 10300689  T
Q  118 gtcacttgat-aactgattagttgac 142  Q
    |||||||||| |||||||||||||||    
T  10300690 gtcacttgataaactgattagttgac 10300715  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 2617298 - 2617210
Alignment:
Q  146 tagaaatggagacaataaggacagaaaaggatctgatattctaaatattcaaatcaaattgtatgattgtaaat-gaagggttacaaca 233  Q
    |||| ||||||||||||||||  ||||||||| |||| ||||||| ||||||||||||| || || |||||||| ||||||||| ||||    
T  2617298 tagatatggagacaataaggaatgaaaaggatatgatcttctaaagattcaaatcaaatagtgtgtttgtaaatggaagggttaaaaca 2617210  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 237
Target Start/End: Original strand, 10300717 - 10300752
Alignment:
Q  202 aattgtatgattgtaaatgaagggttacaacaaata 237  Q
    ||||||||||||||||||||||||||||||||||||    
T  10300717 aattgtatgattgtaaatgaagggttacaacaaata 10300752  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 2603693 - 2603617
Alignment:
Q  146 tagaaatggagacaataaggacagaaaaggatctgatattctaaatattcaaatcaaattgtatgattgtaaatgaa 222  Q
    |||| ||||||||||||||||  ||||||||| |||| || |||| |||||||||| || || || |||||||||||    
T  2603693 tagatatggagacaataaggaatgaaaaggatatgatcttttaaagattcaaatcatatagtgtgtttgtaaatgaa 2603617  T

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Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 22223273 - 22223489
Alignment:
Q  18 aagaaaataatacttcaatgattattaaaataaatgtgactttaagtcaccttagcacctatacaggtagaaactaactgttacatccatgtgcctctaa 117  Q
    ||||||||||||||||||||||| |||||||||||||          ||||||||||||| |||||||||||| ||||||||||||||||||||||| ||    
T  22223273 aagaaaataatacttcaatgattgttaaaataaatgt----------caccttagcacctctacaggtagaaaataactgttacatccatgtgcctcaaa 22223362  T
Q  118 gtcacttgataa-ctgattagttgacatatagaaatggagacaataa---ggacagaaaaggatctgatattctaaatattcaaatcaaattgtatgatt 213  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||   |||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  22223363 gtcacttgataaactgattagttgacatatagatatggagacaataattaggacagaaaaggatatgatattctaaatattcaaatcaaattgtaagatt 22223462  T
Q  214 gtaaatgaagggttacaacaaatatat 240  Q
    |||||||||||||||||||||||||||    
T  22223463 gtaaatgaagggttacaacaaatatat 22223489  T

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