View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_low_74 (Length: 240)
Name: NF8349_low_74
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_74 |
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| [»] chr4 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 51490566 - 51490344
Alignment:
| Q |
18 |
gataccagcatgaccttgtacgctaatccaatttttggtgcagcaaaagaagtggacttagtttcatgcttaccaatatcaatcatgatctcaaaatgac |
117 |
Q |
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| T |
51490566 |
gataccagcatgaacttgtacgctaatccaatttttggtgcagcaaaagaagtggacttagtttcatgcttcccaatatcaatcatgatctcaaaatgac |
51490467 |
T |
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| Q |
118 |
aactaccttgagaaggtgaaggatcaatgttggtaacaactgataaaccattgaattgacatgcatctttacgttgatccaatctttgataatacatatt |
217 |
Q |
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| T |
51490466 |
aactaccttgagaaggtgaaggatcaatgttggtaacaactgataaaccattgaattgacatgcatctttacgttgatccaatctttgataatacatatt |
51490367 |
T |
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| Q |
218 |
aaatgcatatgaagcattaccct |
240 |
Q |
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| T |
51490366 |
aaatgcatatgaagcattaccct |
51490344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 46353900 - 46353868
Alignment:
| Q |
203 |
ttgataatacatattaaatgcatatgaagcatt |
235 |
Q |
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| T |
46353900 |
ttgataatacatattaaatgcataagaagcatt |
46353868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 120 - 240
Target Start/End: Complemental strand, 706390 - 706268
Alignment:
| Q |
120 |
ctaccttgagaaggtgaaggatcaatgttggtaacaactgataaaccattgaattgacatgcatctttacgttgatccaa--tctttgataatacatatt |
217 |
Q |
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| T |
706390 |
ctaccttgagaatgtgaaggatcaatattggtaacaactgataaaccattaaattgacatgcatctttaaattgatccaatgtttttgataaaacatatt |
706291 |
T |
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| Q |
218 |
aaatgcatatgaagcattaccct |
240 |
Q |
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| T |
706290 |
aagtgcgtatgaagcattaccct |
706268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 10251035 - 10251067
Alignment:
| Q |
203 |
ttgataatacatattaaatgcatatgaagcatt |
235 |
Q |
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| T |
10251035 |
ttgataatacatattaaatgcatatgaagcatt |
10251067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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