View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8349_low_8 (Length: 565)

Name: NF8349_low_8
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8349_low_8
NF8349_low_8
[»] chr2 (11 HSPs)
chr2 (64-442)||(39822890-39823266)
chr2 (198-293)||(39914852-39914947)
chr2 (196-293)||(39907877-39907972)
chr2 (496-550)||(39822782-39822836)
chr2 (500-550)||(18058963-18059013)
chr2 (295-429)||(18058765-18058897)
chr2 (1-41)||(39917359-39917399)
chr2 (1-41)||(39823385-39823425)
chr2 (496-533)||(5737391-5737428)
chr2 (302-375)||(25628873-25628946)
chr2 (103-182)||(39914970-39915051)
[»] chr8 (12 HSPs)
chr8 (296-429)||(29525875-29526007)
chr8 (496-550)||(27768778-27768832)
chr8 (496-552)||(9305136-9305192)
chr8 (496-550)||(29525753-29525807)
chr8 (298-375)||(9305291-9305368)
chr8 (299-375)||(30233862-30233937)
chr8 (299-429)||(35162986-35163114)
chr8 (496-549)||(36676442-36676495)
chr8 (496-541)||(41774836-41774881)
chr8 (297-373)||(41775003-41775080)
chr8 (334-375)||(36675674-36675715)
chr8 (516-550)||(35163208-35163242)
[»] chr1 (10 HSPs)
chr1 (300-375)||(43824194-43824269)
chr1 (498-550)||(19563550-19563602)
chr1 (299-375)||(47459173-47459249)
chr1 (496-550)||(37028756-37028810)
chr1 (302-375)||(19563357-19563430)
chr1 (300-363)||(37028555-37028618)
chr1 (510-550)||(47459002-47459042)
chr1 (496-550)||(36384204-36384259)
chr1 (496-545)||(43824390-43824439)
chr1 (302-429)||(36384327-36384450)
[»] chr5 (11 HSPs)
chr5 (496-550)||(24147242-24147296)
chr5 (296-429)||(43146354-43146484)
chr5 (299-375)||(38089036-38089112)
chr5 (297-375)||(29668576-29668653)
chr5 (496-549)||(29668404-29668457)
chr5 (501-550)||(38088875-38088924)
chr5 (498-550)||(43146231-43146283)
chr5 (296-375)||(2134811-2134890)
chr5 (496-550)||(20257091-20257145)
chr5 (299-375)||(20256896-20256971)
chr5 (512-550)||(10056855-10056893)
[»] chr3 (8 HSPs)
chr3 (496-550)||(3984627-3984681)
chr3 (297-375)||(35637278-35637356)
chr3 (496-550)||(2663419-2663473)
chr3 (498-550)||(35637104-35637156)
chr3 (299-429)||(2663223-2663350)
chr3 (316-429)||(49323185-49323295)
chr3 (514-550)||(46411026-46411062)
chr3 (299-357)||(28212599-28212657)
[»] chr4 (4 HSPs)
chr4 (498-550)||(31799162-31799214)
chr4 (334-375)||(50470036-50470077)
chr4 (496-548)||(42171121-42171173)
chr4 (299-375)||(31799336-31799412)
[»] chr7 (3 HSPs)
chr7 (297-375)||(48065060-48065137)
chr7 (297-429)||(24879088-24879218)
chr7 (510-550)||(24878968-24879008)
[»] chr6 (2 HSPs)
chr6 (299-367)||(21508437-21508505)
chr6 (516-549)||(32703196-32703229)


Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 64 - 442
Target Start/End: Complemental strand, 39823266 - 39822890
Alignment:
Q  64 attaaaggcgaaaaacaaacttactcttcatgatcatgaagcaaccagggctacaacagatggatgaaaaactaacacagatgaagaggagatgtatgca 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39823266 attaaaggcgaaaaacaaacttactcttcatgatcatgaagcaaccagggctacaacagatggatgaaaaactaacacagatgaagaggagatgtatgca 39823167  T
Q  164 tcccacgcctgtacctgcagtgtcaccagttacgacggagacattgtgcatgatggaaacagttacgatatagagagagggtttgggtaaagaggagaat 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39823166 tcccacgcctgtacctgcagtgtcaccagttacgacggagacattgtgcgtgatggaaacagttacgatatagagagagggtttgggtaaagaggagaat 39823067  T
Q  264 tgaatcttttgtgcgggtggatttaaataatgaaagagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgac 363  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||| |||||||||||| ||||||||||||||||||||    
T  39823066 tgaatcttttgtgcgggtggatttaaataaagaaagagatattattgcatcaactctcacccaacacatcattcttacacccaaccaataaaaatatgac 39822967  T
Q  364 acatgttattaaatttnnnnnnnnngtgtggttttaattaagaaaatggaaacacaaatggtggtgatagttcttgtca 442  Q
    ||||||||||||||||         ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39822966 acatgttattaaattt--aaaaaaagtgtgattttaattaagaaaatggaaacataaatggtggtgatagttcttgtca 39822890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 198 - 293
Target Start/End: Complemental strand, 39914947 - 39914852
Alignment:
Q  198 acggagacattgtgcatgatggaaacagttacgatatagagagagggtttgggtaaagaggagaattgaatcttttgtgcgggtggatttaaataa 293  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||| || ||||||||||||| ||||||| ||||||||||||||||    
T  39914947 acggagacattgtgcctgatggaaacagttacgatatggagagagggtttgggtgaaaaggagaattgaattttttgtgtgggtggatttaaataa 39914852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 196 - 293
Target Start/End: Complemental strand, 39907972 - 39907877
Alignment:
Q  196 cgacggagacattgtgcatgatggaaacagttacgatatagagagagggtttgggtaaagaggagaattgaatcttttgtgcgggtggatttaaataa 293  Q
    |||||||||||||||||||||||||||||||||||||| ||||||  ||||||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  39907972 cgacggagacattgtgcatgatggaaacagttacgatacagagag--ggtttgggtgaagaggagaattgaatcttttctgctggtggatttaaataa 39907877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 496 - 550
Target Start/End: Complemental strand, 39822836 - 39822782
Alignment:
Q  496 tctgatattaaatctttttattattttaatgaggtgtttgattttaattggttgg 550  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39822836 tctgatattaaatctttttattatttgaatgaggtgtttgattttaattggttgg 39822782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 500 - 550
Target Start/End: Original strand, 18058963 - 18059013
Alignment:
Q  500 atattaaatctttttattattttaatgaggtgtttgattttaattggttgg 550  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18058963 atattaattctttttattattttaatgaggtgtttgattttaattggttgg 18059013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 429
Target Start/End: Original strand, 18058765 - 18058897
Alignment:
Q  295 gaaagagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaaatttnnnnnnnnngtgtgg 394  Q
    |||||||||||| |||||| |||||||||  |||| || |||||||||    || |||||||||||||||||||||||||| |||         |||||     
T  18058765 gaaagagatattcttgcatgaactctcacccaacacattattcttacacttgactaataaaaatatgacacatgttattaacttt--aaataaagtgtga 18058862  T
Q  395 ttttaattaagaaaatggaaacacaaatggtggtg 429  Q
    ||||||||||| ||||||||||| |||||||||||    
T  18058863 ttttaattaaggaaatggaaacataaatggtggtg 18058897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39917399 - 39917359
Alignment:
Q  1 ataggaaagctgatattggtgccacagtccccaaaaggatg 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39917399 ataggaaagctgatattggtgccacagtccccaaaaggatg 39917359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39823425 - 39823385
Alignment:
Q  1 ataggaaagctgatattggtgccacagtccccaaaaggatg 41  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  39823425 ataggaaagctgatatcggtgccacagtccccaaaaggatg 39823385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 496 - 533
Target Start/End: Original strand, 5737391 - 5737428
Alignment:
Q  496 tctgatattaaatctttttattattttaatgaggtgtt 533  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  5737391 tctgatattaattctttttattattttaatgaggtgtt 5737428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 302 - 375
Target Start/End: Original strand, 25628873 - 25628946
Alignment:
Q  302 atattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 375  Q
    ||||| |||||| |||||||||  |||| || ||| ||||| ||||||||||||||||||| |||| |||||||    
T  25628873 atattcttgcatgaactctcacccaacacattatttttacacccaaccaataaaaatatgatacatattattaa 25628946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 39915051 - 39914970
Alignment:
Q  103 agcaaccagggctacaacagatggatgaaaaactaacacagatgaag-aggagatgtatgcatcccac-gcctgtacctgca 182  Q
    ||||||||||||||| ||||||||||||| ||||  |||| |||| | ||||||||||||  |||||| |||||| ||||||    
T  39915051 agcaaccagggctactacagatggatgaacaactggcacaaatgacgaaggagatgtatgtttcccacggcctgttcctgca 39914970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 296 - 429
Target Start/End: Complemental strand, 29526007 - 29525875
Alignment:
Q  296 aaagagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaaatttnnnnnnnnngtgtggt 395  Q
    ||||||||||| |||||| |||||||||  |||| || ||||||||| |||||||||||||||||||||||||||||||| |||         ||||| |    
T  29526007 aaagagatattcttgcatgaactctcaccaaacacattattcttacacccaaccaataaaaatatgacacatgttattaacttt-aaaaaagagtgtgat 29525909  T
Q  396 tttaattaagaaaatggaaacacaaatggtggtg 429  Q
    |||||||||| ||||||||||| |||||||||||    
T  29525908 tttaattaaggaaatggaaacataaatggtggtg 29525875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 496 - 550
Target Start/End: Complemental strand, 27768832 - 27768778
Alignment:
Q  496 tctgatattaaatctttttattattttaatgaggtgtttgattttaattggttgg 550  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27768832 tctgatattaattctttttattattttaatgaggtgtttgattttaattggttgg 27768778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 496 - 552
Target Start/End: Complemental strand, 9305192 - 9305136
Alignment:
Q  496 tctgatattaaatctttttattattttaatgaggtgtttgattttaattggttggtg 552  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  9305192 tctgatattaattctttttattattttaatggggtgtttgattttaattggttggtg 9305136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 496 - 550
Target Start/End: Complemental strand, 29525807 - 29525753
Alignment:
Q  496 tctgatattaaatctttttattattttaatgaggtgtttgattttaattggttgg 550  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  29525807 tctgatattaattctttttattattttaatgaggtgtttgattttaattagttgg 29525753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 298 - 375
Target Start/End: Complemental strand, 9305368 - 9305291
Alignment:
Q  298 agagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 375  Q
    ||||||||||||||||  ||||||||  |||| || |||||||||  |||||||||||||||||||||||||||||||    
T  9305368 agagatattattgcatggactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaa 9305291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 375
Target Start/End: Complemental strand, 30233937 - 30233862
Alignment:
Q  299 gagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 375  Q
    |||||||| |||||| |||||||||  |||| |||||||||||| |||||||||||||| |||||||||||||||||    
T  30233937 gagatattcttgcatgaactctcacctaacacatcattcttacacccaaccaataaaaa-atgacacatgttattaa 30233862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 299 - 429
Target Start/End: Original strand, 35162986 - 35163114
Alignment:
Q  299 gagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaaatttnnnnnnnnngtgtggtttt 398  Q
    |||||||| |||||| |||||||    |||| || ||||||||| || ||||||||||||||||||||||||||||| |||         ||||| ||||    
T  35162986 gagatattcttgcatgaactctcttccaacacattattcttacacccgaccaataaaaatatgacacatgttattaacttt--aaaaaaagtgtgatttt 35163083  T
Q  399 aattaagaaaatggaaacacaaatggtggtg 429  Q
    ||||||| ||||||||||| |||||||||||    
T  35163084 aattaaggaaatggaaacataaatggtggtg 35163114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 496 - 549
Target Start/End: Original strand, 36676442 - 36676495
Alignment:
Q  496 tctgatattaaatctttttattattttaatgaggtgtttgattttaattggttg 549  Q
    ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||    
T  36676442 tctgatattaattatttttattattttaaagaggtgtttgattttaattggttg 36676495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 496 - 541
Target Start/End: Complemental strand, 41774881 - 41774836
Alignment:
Q  496 tctgatattaaatctttttattattttaatgaggtgtttgatttta 541  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||    
T  41774881 tctgatattaattctttttattattttaatgaggtgttagatttta 41774836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 373
Target Start/End: Complemental strand, 41775080 - 41775003
Alignment:
Q  297 aagagatattattgcatcaactctcacggaacatatcattcttacatccaaccaat-aaaaatatgacacatgttatt 373  Q
    |||||||||| |||||| |||||||||  |||| |||||| ||||||||||| ||| ||||| |||||||||||||||    
T  41775080 aagagatattcttgcatgaactctcacccaacacatcatttttacatccaacaaataaaaaaaatgacacatgttatt 41775003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 334 - 375
Target Start/End: Original strand, 36675674 - 36675715
Alignment:
Q  334 attcttacatccaaccaataaaaatatgacacatgttattaa 375  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  36675674 attcttacacccaaccaataaaaatatgacacatattattaa 36675715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 516 - 550
Target Start/End: Original strand, 35163208 - 35163242
Alignment:
Q  516 ttattttaatgaggtgtttgattttaattggttgg 550  Q
    |||||||||||||||||||||||||||||| ||||    
T  35163208 ttattttaatgaggtgtttgattttaattgattgg 35163242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 300 - 375
Target Start/End: Original strand, 43824194 - 43824269
Alignment:
Q  300 agatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 375  Q
    ||||||| ||||||||||||||||  |||| |||||||||||| |||||||||||||| |||||||||||||||||    
T  43824194 agatattcttgcatcaactctcactcaacacatcattcttacacccaaccaataaaaaaatgacacatgttattaa 43824269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 498 - 550
Target Start/End: Original strand, 19563550 - 19563602
Alignment:
Q  498 tgatattaaatctttttattattttaatgaggtgtttgattttaattggttgg 550  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  19563550 tgatattaattctttttattattttaaggaggtgtttgattttaattggttgg 19563602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 375
Target Start/End: Complemental strand, 47459249 - 47459173
Alignment:
Q  299 gagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 375  Q
    |||||||| || |||||| ||||||  |||| || |||||||||||||||||||||||| |||||||||||||||||    
T  47459249 gagatattcttacatcaattctcacctaacacattattcttacatccaaccaataaaaaaatgacacatgttattaa 47459173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 496 - 550
Target Start/End: Original strand, 37028756 - 37028810
Alignment:
Q  496 tctgatattaaatctttttattattttaatgaggtgtttgattttaattggttgg 550  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||    
T  37028756 tctgatattaattctttttattattttaatgaagtgttagattttaattggttgg 37028810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 375
Target Start/End: Original strand, 19563357 - 19563430
Alignment:
Q  302 atattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 375  Q
    ||||| |||||| |||||||||  || | |||||||||||| |||||||||||||||||||||||| |||||||    
T  19563357 atattcttgcataaactctcacccaagacatcattcttacacccaaccaataaaaatatgacacatattattaa 19563430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 363
Target Start/End: Original strand, 37028555 - 37028618
Alignment:
Q  300 agatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgac 363  Q
    ||||||| |||||||||||||||| ||| | |||||||||||| |||||||||||||| |||||    
T  37028555 agatattcttgcatcaactctcaccgaatacatcattcttacacccaaccaataaaaaaatgac 37028618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 47459042 - 47459002
Alignment:
Q  510 tttttattattttaatgaggtgtttgattttaattggttgg 550  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  47459042 tttttattattttaatgaggtgttagattttaattggttgg 47459002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 496 - 550
Target Start/End: Complemental strand, 36384259 - 36384204
Alignment:
Q  496 tctgatattaaatctttttattattttaatgaggtg-tttgattttaattggttgg 550  Q
    ||||||||||| |||||||||||||| ||||||||| |||||||||||||| ||||    
T  36384259 tctgatattaattctttttattatttcaatgaggtgttttgattttaattgattgg 36384204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 496 - 545
Target Start/End: Original strand, 43824390 - 43824439
Alignment:
Q  496 tctgatattaaatctttttattattttaatgaggtgtttgattttaattg 545  Q
    ||||||||||| | |||||||||||||||||| ||||| |||||||||||    
T  43824390 tctgatattaattatttttattattttaatgaagtgttagattttaattg 43824439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 429
Target Start/End: Complemental strand, 36384450 - 36384327
Alignment:
Q  302 atattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaaatttnnnnnnnnngtgtggttttaat 401  Q
    ||||| ||| || |||||||||  |||| |||||||||||| |||||||||||||| || ||| |||||||||| |||         ||||| |||||||    
T  36384450 atatttttgtatgaactctcacccaacacatcattcttacacccaaccaataaaaa-ataacatatgttattaacttt---aaaaaagtgtgattttaat 36384355  T
Q  402 taagaaaatggaaacacaaatggtggtg 429  Q
    |||| ||||||||||| ||||| |||||    
T  36384354 taaggaaatggaaacataaatgatggtg 36384327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 496 - 550
Target Start/End: Original strand, 24147242 - 24147296
Alignment:
Q  496 tctgatattaaatctttttattattttaatgaggtgtttgattttaattggttgg 550  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24147242 tctgatattaattctttttattattttaatgaggtgtttgattttaattggttgg 24147296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 429
Target Start/End: Complemental strand, 43146484 - 43146354
Alignment:
Q  296 aaagagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaaatttnnnnnnnnngtgtggt 395  Q
    ||||||||||| || ||| |||||||||  |||| || ||||||||| |||||||||||||||||||||||||||||||| |||         ||||| |    
T  43146484 aaagagatattcttacatgaactctcacccaacacattattcttacacccaaccaataaaaatatgacacatgttattaacttt---aaaaaagtgtgat 43146388  T
Q  396 tttaattaagaaaatggaaacacaaatggtggtg 429  Q
    |||||||||| ||||||||||  |||||||||||    
T  43146387 tttaattaaggaaatggaaacgtaaatggtggtg 43146354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 299 - 375
Target Start/End: Complemental strand, 38089112 - 38089036
Alignment:
Q  299 gagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 375  Q
    |||||||| |||||||||||||||   |||| || ||||||||| ||||||||||||||||||||||||||||||||    
T  38089112 gagatattcttgcatcaactctcatccaacacattattcttacacccaaccaataaaaatatgacacatgttattaa 38089036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 375
Target Start/End: Complemental strand, 29668653 - 29668576
Alignment:
Q  297 aagagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 375  Q
    |||||||||| |||||| |||||||||  |||| || ||||||||||||||||||||||||||||||||||||| ||||    
T  29668653 aagagatattcttgcatgaactctcacc-aacacattattcttacatccaaccaataaaaatatgacacatgttgttaa 29668576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 496 - 549
Target Start/End: Complemental strand, 29668457 - 29668404
Alignment:
Q  496 tctgatattaaatctttttattattttaatgaggtgtttgattttaattggttg 549  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||| ||||    
T  29668457 tctgatattaattcattttattattttaatgaggtgtttgattttaattagttg 29668404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 501 - 550
Target Start/End: Complemental strand, 38088924 - 38088875
Alignment:
Q  501 tattaaatctttttattattttaatgaggtgtttgattttaattggttgg 550  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  38088924 tattaattctttttattattttaatgaggtgtttgatttcaattggttgg 38088875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 498 - 550
Target Start/End: Complemental strand, 43146283 - 43146231
Alignment:
Q  498 tgatattaaatctttttattattttaatgaggtgtttgattttaattggttgg 550  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||| ||||    
T  43146283 tgatattaattctttttattgttttaatgaggtgtttgattttaattgattgg 43146231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 375
Target Start/End: Complemental strand, 2134890 - 2134811
Alignment:
Q  296 aaagagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 375  Q
    ||||||||||| |||||| ||||||||   |||| |||||| ||||| | |||||||||||| |||||||||||| ||||    
T  2134890 aaagagatattcttgcatgaactctcagccaacacatcattgttacaccaaaccaataaaaaaatgacacatgttcttaa 2134811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 550
Target Start/End: Original strand, 20257091 - 20257145
Alignment:
Q  496 tctgatattaaatctttttattattttaatgaggtgtttgattttaattggttgg 550  Q
    ||||||||||| | ||| | ||||||||||||||||||||||||||||| |||||    
T  20257091 tctgatattaattttttattttattttaatgaggtgtttgattttaattagttgg 20257145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 375
Target Start/End: Original strand, 20256896 - 20256971
Alignment:
Q  299 gagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 375  Q
    |||||||| |||||| ||||||||   |||| ||  |||||||| ||||| ||||||||||||||||||||||||||    
T  20256896 gagatattcttgcataaactctcatccaacacatttttcttacacccaac-aataaaaatatgacacatgttattaa 20256971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 512 - 550
Target Start/End: Complemental strand, 10056893 - 10056855
Alignment:
Q  512 tttattattttaatgaggtgtttgattttaattggttgg 550  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  10056893 tttattattttaatgaggtgtttgatttttatttgttgg 10056855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 496 - 550
Target Start/End: Original strand, 3984627 - 3984681
Alignment:
Q  496 tctgatattaaatctttttattattttaatgaggtgtttgattttaattggttgg 550  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  3984627 tctgatattaattctttttattattgtaatgaggtgtttgattttaattggttgg 3984681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 375
Target Start/End: Complemental strand, 35637356 - 35637278
Alignment:
Q  297 aagagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 375  Q
    ||||||| || |||||| |||||||||  |||| || ||||||||| ||||||||||||||||||||||||||||||||    
T  35637356 aagagattttcttgcatgaactctcacccaacacattattcttacacccaaccaataaaaatatgacacatgttattaa 35637278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 496 - 550
Target Start/End: Original strand, 2663419 - 2663473
Alignment:
Q  496 tctgatattaaatctttttattattttaatgaggtgtttgattttaattggttgg 550  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||    
T  2663419 tctgatattaattctttttattattttaatgagatgttagattttaattggttgg 2663473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 498 - 550
Target Start/End: Complemental strand, 35637156 - 35637104
Alignment:
Q  498 tgatattaaatctttttattattttaatgaggtgtttgattttaattggttgg 550  Q
    ||||||||  |||||||||||||||||| ||||||||||||||||||||||||    
T  35637156 tgatattagttctttttattattttaattaggtgtttgattttaattggttgg 35637104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 299 - 429
Target Start/End: Original strand, 2663223 - 2663350
Alignment:
Q  299 gagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaaatttnnnnnnnnngtgtggtttt 398  Q
    |||||||| ||| || |||||||||  |||| |||||||||||| | |||||||||||| |||||| |||||||||| |||         ||||| ||||    
T  2663223 gagatattcttgtatgaactctcactcaacacatcattcttacaccaaaccaataaaaa-atgacatatgttattaacttt--aaaaaaagtgtgatttt 2663319  T
Q  399 aattaagaaaatggaaacacaaatggtggtg 429  Q
    ||||||| ||||||||||| |||||||||||    
T  2663320 aattaaggaaatggaaacataaatggtggtg 2663350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 429
Target Start/End: Complemental strand, 49323295 - 49323185
Alignment:
Q  316 actctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaaatttnnnnnnnnngtgtggttttaattaagaaaatggaaa 415  Q
    ||||||||  |||| |||||||||||| | |||||||||||| |||||||||||| |||| |||         ||||| ||||||||||| |||||||||    
T  49323295 actctcactcaacacatcattcttacacctaaccaataaaaagatgacacatgttgttaacttt---aaaaaagtgtgattttaattaaggaaatggaaa 49323199  T
Q  416 cacaaatggtggtg 429  Q
    || |||||||||||    
T  49323198 cataaatggtggtg 49323185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 514 - 550
Target Start/End: Complemental strand, 46411062 - 46411026
Alignment:
Q  514 tattattttaatgaggtgtttgattttaattggttgg 550  Q
    ||||||||||||||||||||||||||||| |||||||    
T  46411062 tattattttaatgaggtgtttgattttaactggttgg 46411026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 28212599 - 28212657
Alignment:
Q  299 gagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaa 357  Q
    |||||||| |||||| ||||||||   |||| |||||||||||| ||||||||||||||    
T  28212599 gagatattcttgcataaactctcatccaacacatcattcttacacccaaccaataaaaa 28212657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 498 - 550
Target Start/End: Complemental strand, 31799214 - 31799162
Alignment:
Q  498 tgatattaaatctttttattattttaatgaggtgtttgattttaattggttgg 550  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  31799214 tgatattaattctttttattattttaatgaggtgttagattttaattggttgg 31799162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 375
Target Start/End: Original strand, 50470036 - 50470077
Alignment:
Q  334 attcttacatccaaccaataaaaatatgacacatgttattaa 375  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  50470036 attcttacatccaaccaataaaaatatgacacatgttattaa 50470077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 496 - 548
Target Start/End: Complemental strand, 42171173 - 42171121
Alignment:
Q  496 tctgatattaaatctttttattattttaatgaggtgtttgattttaattggtt 548  Q
    ||||||||||| | |||||||||||||||||| ||||||||||||||||||||    
T  42171173 tctgatattaattttttttattattttaatgaagtgtttgattttaattggtt 42171121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 375
Target Start/End: Complemental strand, 31799412 - 31799336
Alignment:
Q  299 gagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 375  Q
    ||||| || |||||| |||||||||  |||| |||||||||| |  ||| ||||||||| |||||||||||||||||    
T  31799412 gagattttcttgcatgaactctcaccaaacacatcattcttatactcaatcaataaaaaaatgacacatgttattaa 31799336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 297 - 375
Target Start/End: Complemental strand, 48065137 - 48065060
Alignment:
Q  297 aagagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 375  Q
    |||||||||| |||||| ||||||||   |||| || ||||||||| ||||||||||||||||||||||||||||||||    
T  48065137 aagagatatttttgcatgaactctcatc-aacacattattcttacacccaaccaataaaaatatgacacatgttattaa 48065060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 429
Target Start/End: Complemental strand, 24879218 - 24879088
Alignment:
Q  297 aagagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaaatttnnnnnnnnngtgtggtt 396  Q
    |||||||||| |||||| |||||||||  |||| || ||||||||| || | |||||||||||||||| |||||||||| |||          |||| ||    
T  24879218 aagagatattcttgcatgaactctcacccaacacattattcttacacccgatcaataaaaatatgacatatgttattaactttaaaaaaaa--tgtgatt 24879121  T
Q  397 ttaattaagaaaatggaaacacaaatggtggtg 429  Q
    ||||||||| ||||||||||| |||||||||||    
T  24879120 ttaattaaggaaatggaaacataaatggtggtg 24879088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 24879008 - 24878968
Alignment:
Q  510 tttttattattttaatgaggtgtttgattttaattggttgg 550  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  24879008 tttttattattttaatgagatgtttgattttaattggttgg 24878968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 367
Target Start/End: Original strand, 21508437 - 21508505
Alignment:
Q  299 gagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacat 367  Q
    ||||| || |||||| |||||| ||  ||||||| |||||||||  |||||||||||||||||||||||    
T  21508437 gagatgttcttgcatgaactcttacccaacatattattcttacacgcaaccaataaaaatatgacacat 21508505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 516 - 549
Target Start/End: Complemental strand, 32703229 - 32703196
Alignment:
Q  516 ttattttaatgaggtgtttgattttaattggttg 549  Q
    |||||||||||||||||| |||||||||||||||    
T  32703229 ttattttaatgaggtgttggattttaattggttg 32703196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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