View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8349_low_80 (Length: 229)

Name: NF8349_low_80
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8349_low_80
NF8349_low_80
[»] chr7 (6 HSPs)
chr7 (12-229)||(2590785-2591002)
chr7 (62-191)||(10300964-10301088)
chr7 (9-74)||(10301110-10301175)
chr7 (189-229)||(10300779-10300819)
chr7 (31-118)||(18358793-18358881)
chr7 (78-118)||(28243160-28243200)
[»] chr1 (8 HSPs)
chr1 (9-229)||(22223522-22223740)
chr1 (29-131)||(35120127-35120230)
chr1 (84-138)||(11711359-11711413)
chr1 (78-138)||(28016565-28016625)
chr1 (88-134)||(31148950-31148996)
chr1 (86-126)||(22537970-22538010)
chr1 (46-116)||(48252411-48252482)
chr1 (97-138)||(1281470-1281511)
[»] chr8 (2 HSPs)
chr8 (87-139)||(35524240-35524292)
chr8 (85-130)||(10386846-10386891)
[»] chr2 (6 HSPs)
chr2 (68-126)||(1465735-1465794)
chr2 (78-125)||(24080350-24080397)
chr2 (89-128)||(1465833-1465872)
chr2 (89-127)||(18587170-18587208)
chr2 (92-128)||(1816575-1816611)
chr2 (92-124)||(34099870-34099902)
[»] chr4 (4 HSPs)
chr4 (88-138)||(37538164-37538214)
chr4 (86-118)||(31053064-31053096)
chr4 (91-125)||(13807493-13807527)
chr4 (88-128)||(2742137-2742177)
[»] chr5 (4 HSPs)
chr5 (90-139)||(17358505-17358554)
chr5 (78-125)||(11649063-11649110)
chr5 (85-118)||(14717359-14717392)
chr5 (85-118)||(19117298-19117331)
[»] scaffold0229 (1 HSPs)
scaffold0229 (97-138)||(7478-7519)
[»] chr3 (1 HSPs)
chr3 (85-138)||(19710888-19710941)
[»] chr6 (1 HSPs)
chr6 (109-145)||(7594167-7594203)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 2591002 - 2590785
Alignment:
Q  12 caaaataaatatgatcatgccacattagttcatgaatatgaaaatacatgagtgaccatatttattattgaaatgacaacacatcattggatgcatgtgt 111  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2591002 caaaataaatatgatcatgccacgttagttcatgaatatgaaaatacatgagtgaccatatttattattgaaatgacaacacatcattggatacatgtgt 2590903  T
Q  112 aaaataactttacactgtcagtgtataataaatatttgagaagaatggaacctctcctgcattcaccagcttaacatgtagaagtcaactattaaatcgt 211  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||| ||||    
T  2590902 aaaataactttacaatgtcagtttataataaatatttgagaagaatggaacctcttctgcatttaccagcttaacatgtataagtcaactattaagtcgt 2590803  T
Q  212 tcaaggtagtaaaggtta 229  Q
    ||||||||||||||||||    
T  2590802 tcaaggtagtaaaggtta 2590785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 62 - 191
Target Start/End: Complemental strand, 10301088 - 10300964
Alignment:
Q  62 agtgaccatatttattattgaaatgacaacacatcattggatgcatgtgtaaaataactttacactgtcagtgtataataaatatttgagaagaatggaa 161  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||| |||     ||||||||||||||||||||||||||    
T  10301088 agtgaccgtatttattattgaaatgacaacacatcattgaatgcatgtataatataactttacaccgtc-----ataataaatatttgagaagaatggaa 10300994  T
Q  162 cctctcctgcattcaccagcttaacatgta 191  Q
    ||||||||||||| || |||||||||||||    
T  10300993 cctctcctgcatttactagcttaacatgta 10300964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 10301175 - 10301110
Alignment:
Q  9 aaccaaaataaatatgatcatgccacattagttcatgaatatgaaaatacatgagtgaccatattt 74  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10301175 aaccaaaataaatatgaacatgccacattagttcatgaatatgaaaatacatgagtgaccatattt 10301110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 10300819 - 10300779
Alignment:
Q  189 gtagaagtcaactattaaatcgttcaaggtagtaaaggtta 229  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  10300819 gtagaagtcaactattaagtcgttcaaggtagtaaaggtta 10300779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 18358881 - 18358793
Alignment:
Q  31 ccacattagttcatgaatatgaaaatacatgagtgaccatatttatta-ttgaaatgacaacacatcattggatgcatgtgtaaaataa 118  Q
    |||||||| || ||||| ||||||| |||||| |   |||||| |||| |||| |||||||||||||||| |||||||||| |||||||    
T  18358881 ccacattaattaatgaacatgaaaacacatgacttgtcatattcattaattgacatgacaacacatcatttgatgcatgtgcaaaataa 18358793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 28243200 - 28243160
Alignment:
Q  78 attgaaatgacaacacatcattggatgcatgtgtaaaataa 118  Q
    ||||| |||||||||||||||||||||| ||| ||||||||    
T  28243200 attgatatgacaacacatcattggatgcgtgtttaaaataa 28243160  T

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Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 22223740 - 22223522
Alignment:
Q  9 aaccaaaataaatatgatcatgccacattagttcatgaatatgaaaatacatgagtgaccatatttattattgaaatgacaacacatcattggatgcatg 108  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22223740 aaccaaaataaatatgaacatgccacattagttcatgaatatgaaaatacatgagtgaccatatttattattgaaatgacaacacatcattggatgcatg 22223641  T
Q  109 tgtaaaataactttacactgtcagtgtataataaatatttgagaagaatggaacctctcctgcattcaccagcttaacatgtagaagtcaactattaaat 208  Q
    ||||||  || |||||||| | | ||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||| |||||||||||||| |    
T  22223640 tgtaaa--aattttacactattaatgtataataaatatttgagaagaatggaacctctcatgcatttactagcttaacatgtaaaagtcaactattaagt 22223543  T
Q  209 cgttcaaggtagtaaaggtta 229  Q
    || ||||||||||||||||||    
T  22223542 cgatcaaggtagtaaaggtta 22223522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 35120127 - 35120230
Alignment:
Q  29 tgccacattagttcatgaatatgaaaatacatgagtgaccatatttatta-ttgaaatgacaacacatcattggatgcatgtgtaaaataactttacact 127  Q
    |||||||| | || ||||||||||||| | | ||||   | ||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||||||||    
T  35120127 tgccacatcaattaatgaatatgaaaacatacgagttgtcgtatttattaattgacatggcaatacatcattggatgcatgtgtaaaataactttacact 35120226  T
Q  128 gtca 131  Q
    ||||    
T  35120227 gtca 35120230  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 11711359 - 11711413
Alignment:
Q  84 atgacaacacatcattggatgcatgtgtaaaataactttacactgtcagtgtata 138  Q
    ||||||||||| ||||| ||| |||||||||||| ||||||||||||||||||||    
T  11711359 atgacaacacaacattgaatgaatgtgtaaaatagctttacactgtcagtgtata 11711413  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 28016625 - 28016565
Alignment:
Q  78 attgaaatgacaacacatcattggatgcatgtgtaaaataactttacactgtcagtgtata 138  Q
    ||||||||||||||||||||||| ||| ||||||||||||| | ||||| || ||||||||    
T  28016625 attgaaatgacaacacatcattgaatgtatgtgtaaaataattgtacacggtaagtgtata 28016565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 31148950 - 31148996
Alignment:
Q  88 caacacatcattggatgcatgtgtaaaataactttacactgtcagtg 134  Q
    ||||||||||||||||||| ||||||||||| ||||||||| |||||    
T  31148950 caacacatcattggatgcaggtgtaaaataattttacactgacagtg 31148996  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 22538010 - 22537970
Alignment:
Q  86 gacaacacatcattggatgcatgtgtaaaataactttacac 126  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  22538010 gacaacacatcattggatgcatgtgtaaaatatttttacac 22537970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 48252482 - 48252411
Alignment:
Q  46 aatatgaaaatacatgagtgaccatatttatt-attgaaatgacaacacatcattggatgcatgtgtaaaat 116  Q
    ||||||||||||||||||| | |||||||||| |||||  ||  |||||||||||| ||| |||||||||||    
T  48252482 aatatgaaaatacatgagttatcatatttattaattgatgtggaaacacatcattgaatgtatgtgtaaaat 48252411  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 1281470 - 1281511
Alignment:
Q  97 attggatgcatgtgtaaaataactttacactgtcagtgtata 138  Q
    ||||||||||||||||||| || |||||||||| ||||||||    
T  1281470 attggatgcatgtgtaaaaaaagtttacactgtaagtgtata 1281511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 35524292 - 35524240
Alignment:
Q  87 acaacacatcattggatgcatgtgtaaaataactttacactgtcagtgtataa 139  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  35524292 acaacacattattggatgcatgtgtaaagtaactttacactgtcagtgtataa 35524240  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 10386891 - 10386846
Alignment:
Q  85 tgacaacacatcattggatgcatgtgtaaaataactttacactgtc 130  Q
    |||||||||||| |||||||||||||| |||||  |||||||||||    
T  10386891 tgacaacacatcgttggatgcatgtgtgaaatacatttacactgtc 10386846  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 1465794 - 1465735
Alignment:
Q  68 catatttatta-ttgaaatgacaacacatcattggatgcatgtgtaaaataactttacac 126  Q
    ||||||||||| ||||  |||||||||||||||||||||||||||||||||||| |||||    
T  1465794 catatttattaattgacgtgacaacacatcattggatgcatgtgtaaaataactgtacac 1465735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 24080397 - 24080350
Alignment:
Q  78 attgaaatgacaacacatcattggatgcatgtgtaaaataactttaca 125  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||    
T  24080397 attgagatgacaacacatcattggatgcatatgtaaaataactttaca 24080350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 128
Target Start/End: Original strand, 1465833 - 1465872
Alignment:
Q  89 aacacatcattggatgcatgtgtaaaataactttacactg 128  Q
    |||||||||||||||||||||||||||||| | |||||||    
T  1465833 aacacatcattggatgcatgtgtaaaataattgtacactg 1465872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 127
Target Start/End: Complemental strand, 18587208 - 18587170
Alignment:
Q  89 aacacatcattggatgcatgtgtaaaataactttacact 127  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  18587208 aacacattattggatgcatgtgtaaaatcactttacact 18587170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 1816575 - 1816611
Alignment:
Q  92 acatcattggatgcatgtgtaaaataactttacactg 128  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  1816575 acatcattggatggatgtgtaaaatatctttacactg 1816611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 34099870 - 34099902
Alignment:
Q  92 acatcattggatgcatgtgtaaaataactttac 124  Q
    ||||||||| |||||||||||||||||||||||    
T  34099870 acatcattgaatgcatgtgtaaaataactttac 34099902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 37538164 - 37538214
Alignment:
Q  88 caacacatcattggatgcatgtgtaaaataactttacactgtcagtgtata 138  Q
    ||||||||| ||| |||||||||| ||||||||||||||||||||||||||    
T  37538164 caacacatcgttgaatgcatgtgtgaaataactttacactgtcagtgtata 37538214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 31053064 - 31053096
Alignment:
Q  86 gacaacacatcattggatgcatgtgtaaaataa 118  Q
    |||||||||||||||||||||||||||||||||    
T  31053064 gacaacacatcattggatgcatgtgtaaaataa 31053096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 13807527 - 13807493
Alignment:
Q  91 cacatcattggatgcatgtgtaaaataactttaca 125  Q
    |||||||||| ||||||||||||||||||||||||    
T  13807527 cacatcattgaatgcatgtgtaaaataactttaca 13807493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 2742177 - 2742137
Alignment:
Q  88 caacacatcattggatgcatgtgtaaaataactttacactg 128  Q
    ||||||||||||||||| ||||||||||||| | |||||||    
T  2742177 caacacatcattggatgtatgtgtaaaataattgtacactg 2742137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 17358554 - 17358505
Alignment:
Q  90 acacatcattggatgcatgtgtaaaataactttacactgtcagtgtataa 139  Q
    ||||||||| | ||||||||||||||||||||||||| ||||||||||||    
T  17358554 acacatcatagtatgcatgtgtaaaataactttacaccgtcagtgtataa 17358505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 11649110 - 11649063
Alignment:
Q  78 attgaaatgacaacacatcattggatgcatgtgtaaaataactttaca 125  Q
    ||||| ||| ||||||||||||| |||||||| |||||||||||||||    
T  11649110 attgagatgtcaacacatcattgtatgcatgtataaaataactttaca 11649063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 14717359 - 14717392
Alignment:
Q  85 tgacaacacatcattggatgcatgtgtaaaataa 118  Q
    ||||||||||||||| ||||||||||||||||||    
T  14717359 tgacaacacatcattagatgcatgtgtaaaataa 14717392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 19117298 - 19117331
Alignment:
Q  85 tgacaacacatcattggatgcatgtgtaaaataa 118  Q
    ||||||||||| ||||||||||||||||||||||    
T  19117298 tgacaacacattattggatgcatgtgtaaaataa 19117331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 7478 - 7519
Alignment:
Q  97 attggatgcatgtgtaaaataactttacactgtcagtgtata 138  Q
    ||||||||||||||||||| || |||||||||| ||||||||    
T  7478 attggatgcatgtgtaaaaaaagtttacactgtaagtgtata 7519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 19710941 - 19710888
Alignment:
Q  85 tgacaacacatcattggatgcatgtgtaaaataactttacactgtcagtgtata 138  Q
    ||||||||||| ||||| ||||||||||||||| ||||| || | |||||||||    
T  19710941 tgacaacacatgattgggtgcatgtgtaaaatagctttaaaccgacagtgtata 19710888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 7594167 - 7594203
Alignment:
Q  109 tgtaaaataactttacactgtcagtgtataataaata 145  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  7594167 tgtaaaataactttacaccgtcagtgtatagtaaata 7594203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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