View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8349_low_83 (Length: 226)

Name: NF8349_low_83
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8349_low_83
NF8349_low_83
[»] chr1 (33 HSPs)
chr1 (39-226)||(25672409-25672596)
chr1 (108-193)||(31827051-31827136)
chr1 (109-193)||(21401498-21401582)
chr1 (111-226)||(49065253-49065368)
chr1 (109-226)||(18512230-18512347)
chr1 (109-193)||(46907295-46907379)
chr1 (110-226)||(51571234-51571350)
chr1 (109-226)||(9566847-9566964)
chr1 (110-223)||(26469429-26469542)
chr1 (125-186)||(48103266-48103327)
chr1 (109-193)||(18434895-18434979)
chr1 (110-186)||(19947632-19947708)
chr1 (118-214)||(50932383-50932479)
chr1 (3-38)||(25677785-25677820)
chr1 (109-171)||(40328656-40328718)
chr1 (153-223)||(44914503-44914573)
chr1 (109-223)||(50149016-50149130)
chr1 (143-223)||(15082972-15083051)
chr1 (166-226)||(25509123-25509183)
chr1 (118-226)||(31433558-31433665)
chr1 (134-193)||(2269484-2269543)
chr1 (110-189)||(26207945-26208024)
chr1 (131-226)||(46100932-46101027)
chr1 (164-226)||(8846041-8846103)
chr1 (153-223)||(33076190-33076260)
chr1 (109-175)||(45640419-45640485)
chr1 (118-191)||(37186948-37187021)
chr1 (118-223)||(37619614-37619719)
chr1 (110-193)||(2571735-2571819)
chr1 (153-189)||(27533415-27533451)
chr1 (111-175)||(30570642-30570706)
chr1 (113-185)||(31975099-31975170)
chr1 (109-193)||(44517848-44517932)
[»] chr6 (20 HSPs)
chr6 (109-226)||(26595416-26595533)
chr6 (109-193)||(4820467-4820551)
chr6 (109-193)||(16199550-16199634)
chr6 (123-193)||(11014891-11014961)
chr6 (108-193)||(30423438-30423523)
chr6 (110-226)||(22079451-22079567)
chr6 (108-223)||(32316814-32316929)
chr6 (109-223)||(15974678-15974792)
chr6 (132-226)||(3853217-3853311)
chr6 (161-226)||(19367627-19367690)
chr6 (132-193)||(30457605-30457666)
chr6 (109-226)||(31883190-31883307)
chr6 (108-192)||(3552041-3552125)
chr6 (118-193)||(18737463-18737538)
chr6 (143-193)||(5694072-5694122)
chr6 (153-226)||(277058-277131)
chr6 (161-222)||(20998084-20998145)
chr6 (153-226)||(34175249-34175322)
chr6 (133-193)||(2241936-2241996)
chr6 (110-226)||(17551267-17551382)
[»] scaffold0519 (1 HSPs)
scaffold0519 (108-223)||(11852-11967)
[»] chr8 (21 HSPs)
chr8 (108-223)||(11253428-11253543)
chr8 (108-226)||(29025327-29025445)
chr8 (109-226)||(37133749-37133866)
chr8 (109-226)||(10839369-10839486)
chr8 (108-193)||(43632224-43632309)
chr8 (108-226)||(34639600-34639718)
chr8 (109-193)||(13106580-13106664)
chr8 (111-191)||(32133425-32133505)
chr8 (139-223)||(36660367-36660451)
chr8 (108-223)||(34186677-34186792)
chr8 (110-184)||(3381459-3381532)
chr8 (153-223)||(43397851-43397921)
chr8 (153-223)||(10731616-10731686)
chr8 (135-193)||(24479323-24479381)
chr8 (110-223)||(22719510-22719623)
chr8 (153-226)||(38958482-38958555)
chr8 (153-193)||(2883288-2883328)
chr8 (153-193)||(3151238-3151278)
chr8 (133-193)||(23754617-23754677)
chr8 (109-193)||(39856138-39856222)
chr8 (114-226)||(40517325-40517437)
[»] scaffold0087 (1 HSPs)
scaffold0087 (110-226)||(53249-53365)
[»] chr4 (36 HSPs)
chr4 (109-193)||(39654924-39655008)
chr4 (109-193)||(34616661-34616745)
chr4 (109-193)||(38382421-38382505)
chr4 (109-193)||(47181941-47182025)
chr4 (109-193)||(48402084-48402168)
chr4 (132-193)||(19473866-19473927)
chr4 (123-223)||(37997324-37997424)
chr4 (109-193)||(56363932-56364016)
chr4 (110-223)||(15175616-15175729)
chr4 (109-226)||(1627442-1627562)
chr4 (109-223)||(26732295-26732409)
chr4 (135-193)||(39478537-39478595)
chr4 (110-208)||(53801647-53801745)
chr4 (111-193)||(56474656-56474738)
chr4 (108-193)||(336693-336778)
chr4 (143-223)||(10250436-10250516)
chr4 (123-226)||(35897768-35897870)
chr4 (109-199)||(515532-515622)
chr4 (109-179)||(2575677-2575747)
chr4 (153-223)||(10474043-10474113)
chr4 (131-193)||(32130148-32130210)
chr4 (108-193)||(26724858-26724943)
chr4 (109-226)||(42853644-42853761)
chr4 (109-189)||(27371245-27371325)
chr4 (108-223)||(50721630-50721745)
chr4 (143-193)||(27051007-27051057)
chr4 (153-223)||(46634170-46634240)
chr4 (108-226)||(50831641-50831759)
chr4 (113-199)||(31995804-31995892)
chr4 (110-179)||(38376378-38376447)
chr4 (153-193)||(12387596-12387636)
chr4 (108-176)||(19748752-19748820)
chr4 (108-176)||(19790986-19791054)
chr4 (109-193)||(29175325-29175409)
chr4 (124-192)||(39447848-39447915)
chr4 (109-176)||(47744399-47744467)
[»] chr7 (22 HSPs)
chr7 (110-226)||(40417841-40417957)
chr7 (109-193)||(46022154-46022238)
chr7 (108-223)||(35072248-35072363)
chr7 (109-226)||(28030943-28031058)
chr7 (109-193)||(7701644-7701728)
chr7 (109-226)||(1284483-1284598)
chr7 (108-223)||(35098589-35098704)
chr7 (108-223)||(41018734-41018849)
chr7 (113-193)||(35207601-35207679)
chr7 (139-223)||(41189460-41189544)
chr7 (108-223)||(31445388-31445503)
chr7 (139-226)||(48062124-48062211)
chr7 (108-193)||(35627906-35627991)
chr7 (113-193)||(42552998-42553078)
chr7 (139-223)||(44189227-44189311)
chr7 (108-223)||(11325971-11326085)
chr7 (130-193)||(41863537-41863600)
chr7 (108-222)||(24614202-24614316)
chr7 (110-223)||(43159463-43159575)
chr7 (125-226)||(44649231-44649330)
chr7 (109-174)||(20337430-20337495)
chr7 (112-189)||(32803793-32803870)
[»] chr5 (24 HSPs)
chr5 (109-193)||(17626086-17626170)
chr5 (109-226)||(33655300-33655418)
chr5 (109-193)||(7552854-7552938)
chr5 (116-226)||(27487954-27488064)
chr5 (113-226)||(13309950-13310063)
chr5 (109-226)||(39591747-39591864)
chr5 (109-226)||(39592139-39592256)
chr5 (110-226)||(33599030-33599145)
chr5 (153-216)||(41321332-41321395)
chr5 (109-223)||(1671612-1671726)
chr5 (110-216)||(28306020-28306126)
chr5 (110-223)||(7287077-7287190)
chr5 (143-187)||(3565190-3565234)
chr5 (139-223)||(14051232-14051316)
chr5 (143-226)||(21353213-21353294)
chr5 (109-177)||(22972233-22972301)
chr5 (108-223)||(5168253-5168368)
chr5 (144-191)||(20270671-20270718)
chr5 (141-223)||(18660829-18660910)
chr5 (118-176)||(24405851-24405909)
chr5 (153-223)||(33958190-33958260)
chr5 (108-189)||(34546520-34546601)
chr5 (153-193)||(8686991-8687031)
chr5 (109-193)||(25560905-25560988)
[»] chr3 (34 HSPs)
chr3 (109-193)||(21217612-21217696)
chr3 (109-193)||(37056944-37057028)
chr3 (108-223)||(55361119-55361234)
chr3 (111-193)||(23592558-23592640)
chr3 (109-226)||(13348021-13348138)
chr3 (109-193)||(44383289-44383373)
chr3 (109-226)||(6178312-6178429)
chr3 (109-226)||(35376968-35377085)
chr3 (109-226)||(43158157-43158274)
chr3 (109-226)||(51982166-51982283)
chr3 (109-193)||(25641470-25641554)
chr3 (110-193)||(42889085-42889168)
chr3 (112-223)||(44463427-44463538)
chr3 (111-184)||(23600702-23600775)
chr3 (109-223)||(46623977-46624091)
chr3 (108-222)||(55151603-55151717)
chr3 (143-192)||(45711360-45711409)
chr3 (108-223)||(41309187-41309302)
chr3 (109-223)||(5114148-5114262)
chr3 (111-177)||(34627770-34627836)
chr3 (110-223)||(37503635-37503748)
chr3 (132-208)||(11630660-11630736)
chr3 (110-210)||(49780628-49780728)
chr3 (111-226)||(28539629-28539744)
chr3 (110-193)||(49086996-49087078)
chr3 (164-223)||(52963257-52963316)
chr3 (164-226)||(50876304-50876366)
chr3 (143-225)||(9753407-9753491)
chr3 (110-223)||(36670902-36671015)
chr3 (108-177)||(39630503-39630572)
chr3 (111-176)||(50559101-50559166)
chr3 (153-193)||(14226636-14226676)
chr3 (153-193)||(33791701-33791741)
chr3 (111-215)||(35201323-35201427)
[»] chr2 (31 HSPs)
chr2 (109-193)||(13333057-13333141)
chr2 (111-193)||(41056636-41056718)
chr2 (109-193)||(25270469-25270553)
chr2 (110-226)||(44977387-44977503)
chr2 (109-223)||(2076639-2076753)
chr2 (109-193)||(3097748-3097832)
chr2 (140-223)||(9647202-9647285)
chr2 (111-226)||(28494927-28495042)
chr2 (132-226)||(19642665-19642759)
chr2 (108-226)||(27490616-27490734)
chr2 (108-193)||(43075983-43076068)
chr2 (123-176)||(3412455-3412508)
chr2 (153-223)||(7663997-7664067)
chr2 (125-223)||(16973664-16973762)
chr2 (109-186)||(8848584-8848661)
chr2 (130-199)||(33273495-33273564)
chr2 (118-226)||(39147833-39147941)
chr2 (143-223)||(41195654-41195734)
chr2 (109-176)||(5054059-5054126)
chr2 (118-193)||(7667211-7667286)
chr2 (111-226)||(34215332-34215445)
chr2 (153-223)||(6511321-6511391)
chr2 (109-223)||(9990761-9990875)
chr2 (110-176)||(32701207-32701273)
chr2 (139-176)||(9521925-9521962)
chr2 (109-190)||(44050119-44050199)
chr2 (110-179)||(44654738-44654807)
chr2 (118-222)||(14255374-14255478)
chr2 (110-226)||(31414977-31415093)
chr2 (132-223)||(33725572-33725664)
chr2 (109-193)||(37737858-37737942)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 39 - 226
Target Start/End: Complemental strand, 25672596 - 25672409
Alignment:
Q  39 catgtggttctttatttcaatggttggatcattgattcaacgtctagagcggaggagatatcggcttcctagagttgtattatatgaacaactatttata 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  25672596 catgtggttctttatttcaatggttggatcattgattcaacgtctagagcggagaagatattggcttcctagagttgtattatctgaacaactatttata 25672497  T
Q  139 tgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaacat 226  Q
    ||||||||||||||| || ||||| |||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  25672496 tgataacttttgatataatcaaaattttacaaagaaaataaagtattgacacaaaaactaaagtaatagaaagagaaaataaaaacat 25672409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 31827136 - 31827051
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    ||||||||| |||| |||||| ||||||| |||| |||||||||||||||||||| |||||||| |||||||  ||||||||||||    
T  31827136 tagagttgtgttatttgaacatctatttagatgacaacttttgatacaaccaaaattttacaaaaaaaatgagttattgacacaaa 31827051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 21401582 - 21401498
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||||| | |||||| ||| ||||||||| |||| ||||| |||||||||||||||| |||||||||||||    
T  21401582 agagttgtgttatttgaacatccatttatgtgacaacttttgaaacaatcaaaattttacaaagaaaatgaggtattgacacaaa 21401498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 49065253 - 49065368
Alignment:
Q  111 agttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaa 210  Q
    |||||| |||| |||| | |||||||||||| || |||  | | |||||||| ||||||||||||||||||||||| |||||| || || | |||||| |    
T  49065253 agttgtgttatttgaatatctatttatatgacaattttaaagataaccaaaattttacaaagaaaatgaagtattggcacaaaaaccaaagcaatagaga 49065352  T
Q  211 gagaaaataaaaacat 226  Q
    |||||| |||||||||    
T  49065353 gagaaagtaaaaacat 49065368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 18512230 - 18512347
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    |||||||| |||| | |||| | ||||||||||||| |||| | ||||| |||| |||| ||||||||||| ||||||||| ||| ||||| | ||||||    
T  18512230 agagttgtgttatttcaacatcaatttatatgataatttttaagacaactaaaattttataaagaaaatgaggtattgacataaaaactaaagcaataga 18512329  T
Q  209 aagagaaaataaaaacat 226  Q
     ||| ||| |||||||||    
T  18512330 gagataaagtaaaaacat 18512347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 46907379 - 46907295
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||||| | ||||||| || ||||||||| |||| ||||| |||| ||||||||||| |||||||||||||    
T  46907379 agagttgtgttatttgaacatccatttatacgacaacttttgagacaatcaaaattttataaagaaaatgaggtattgacacaaa 46907295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 226
Target Start/End: Original strand, 51571234 - 51571350
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaa 209  Q
    ||||||| |||| |||||||| ||||   ||| || |||||  ||||||| || ||||||||||||| || ||||||||||||| || || | |||||||    
T  51571234 gagttgtgttatttgaacaaccatttgattgacaatttttgggacaaccataattttacaaagaaaaagaggtattgacacaaaaaccaaagcaatagaa 51571333  T
Q  210 agagaaaataaaaacat 226  Q
    ||||||| |||||||||    
T  51571334 agagaaagtaaaaacat 51571350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 9566847 - 9566964
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    |||||||| |||| ||||||   | |||||||| ||||||||| |||||||||| |||||| |||||||   ||||||||||||| || || | ||||||    
T  9566847 agagttgtgttatttgaacattcaattatatgacaacttttgagacaaccaaaattttacatagaaaatagggtattgacacaaaaaccaaagcaataga 9566946  T
Q  209 aagagaaaataaaaacat 226  Q
      |||||| |||||||||    
T  9566947 gtgagaaagtaaaaacat 9566964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 223
Target Start/End: Complemental strand, 26469542 - 26469429
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaa 209  Q
    ||||||| |||| |||||| | || ||| ||| ||||||||  |||||||||| ||||||||| |||||| ||| ||||||||| ||  | | ||||||     
T  26469542 gagttgtgttatttgaacatccatatatgtgacaacttttgtgacaaccaaaattttacaaaggaaatgaggtagtgacacaaaaaccgaagcaatagag 26469443  T
Q  210 agagaaaataaaaa 223  Q
    ||||||||||||||    
T  26469442 agagaaaataaaaa 26469429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 48103266 - 48103327
Alignment:
Q  125 aacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattg 186  Q
    |||| |||||||||||| ||||||||| |||||||||| |||||||||||||| | ||||||    
T  48103266 aacatctatttatatgacaacttttgagacaaccaaaattttacaaagaaaataaggtattg 48103327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 18434979 - 18434895
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||| | ||||||| |||| ||||||||  |||||||||| ||| |||||||||||| |||||| ||||||    
T  18434979 agagttgtgttatttgaaaatctatttagatgacaacttttgtgacaaccaaaattttgcaaagaaaatgatgtattggcacaaa 18434895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 186
Target Start/End: Original strand, 19947632 - 19947708
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattg 186  Q
    ||||||| |||| ||||||  ||||||||||| ||||||||| |||||||||| |||| |||||||| || ||||||    
T  19947632 gagttgtgttatttgaacatttatttatatgacaacttttgagacaaccaaaattttataaagaaaaggaggtattg 19947708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 50932479 - 50932383
Alignment:
Q  118 ttatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagaga 214  Q
    |||| |||||| | || ||| ||| |||||||| ||||||||||| ||||||||| |||||| ||||||||||||| |  || | ||||||||||||    
T  50932479 ttatttgaacatccatatatgtgacaacttttgttacaaccaaaattttacaaaggaaatgaggtattgacacaaaaatcaaagcaatagaaagaga 50932383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 25677820 - 25677785
Alignment:
Q  3 atcatgatcaaattttggtatctagtttgggacatg 38  Q
    ||||||||||||||||||||||||||||||||||||    
T  25677820 atcatgatcaaattttggtatctagtttgggacatg 25677785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 40328656 - 40328718
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaa 171  Q
    |||||| | |||| |||||| ||||||| |||||||||||||||| |||||||| ||||||||    
T  40328656 agagttatgttatttgaacatctatttagatgataacttttgatataaccaaaattttacaaa 40328718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 44914503 - 44914573
Alignment:
Q  153 acaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaa 223  Q
    |||| ||||| ||||||||| |||||| ||| ||||||||| ||||| | |||||| ||||||||||||||    
T  44914503 acaatcaaaattttacaaaggaaatgaggtagtgacacaaaaactaaagcaatagagagagaaaataaaaa 44914573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 50149130 - 50149016
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    |||||||| |||| |||||| |  ||||||||| ||||||||  |||| ||||| ||||||||||||||||   ||||||||||| || || | ||||||    
T  50149130 agagttgtgttatttgaacatcattttatatgacaacttttgcaacaatcaaaattttacaaagaaaatgattgattgacacaaaaaccaaagcaataga 50149031  T
Q  209 aagagaaaataaaaa 223  Q
     | ||||| ||||||    
T  50149030 gaaagaaagtaaaaa 50149016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 15082972 - 15083051
Alignment:
Q  143 aacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaa 223  Q
    |||||||| ||||| ||||  ||||||||| |||||||||||||||||||| || || | |||||| ||||||| ||||||    
T  15082972 aacttttg-tacaatcaaacttttacaaaggaaatgaagtattgacacaaaaaccaaagcaatagagagagaaagtaaaaa 15083051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 25509123 - 25509183
Alignment:
Q  166 tacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaacat 226  Q
    |||||||||||||| ||||||||||||| || ||   |||||||| |||||||||||||||    
T  25509123 tacaaagaaaatgaggtattgacacaaaaaccaaaacaatagaaaaagaaaataaaaacat 25509183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 31433665 - 31433558
Alignment:
Q  118 ttatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaa 217  Q
    |||| ||||||||||||| ||||||||||| ||| ||||||| | |||||||||| ||   | |||||||||| || |||||  ||||||| |||  |||    
T  31433665 ttatttgaacaactatttgtatgataacttatgagacaaccatagatttacaaagtaatgtaggtattgacacgaaaactaaaataatagagaga-taaa 31433567  T
Q  218 taaaaacat 226  Q
    |||||||||    
T  31433566 taaaaacat 31433558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 2269484 - 2269543
Alignment:
Q  134 ttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||||||||||||||||||| ||||   ||||||| | |||||||||||||    
T  2269484 ttatatgacaacttttgatacaaccaaaattttatttagaaaataaggtattgacacaaa 2269543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 26208024 - 26207945
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgaca 189  Q
    ||||||| |||| |||||| ||||||| || ||||||||||  | || ||||| ||| |||||||||||| |||||||||    
T  26208024 gagttgtgttatttgaacatctatttagattataacttttgtgataatcaaaattttgcaaagaaaatgatgtattgaca 26207945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 226
Target Start/End: Complemental strand, 46101027 - 46100932
Alignment:
Q  131 tatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaacat 226  Q
    ||||| |||||||||||||   ||||||| | ||||||||||||||| | ||||||||||||| || ||   | |||  |||||||||||||||||    
T  46101027 tatttgtatgataacttttaggacaaccatatatttacaaagaaaattatgtattgacacaaaaaccaaaaaattagtgagagaaaataaaaacat 46100932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 8846103 - 8846041
Alignment:
Q  164 tttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaacat 226  Q
    ||||||||||||| || ||||||||||||| || || | |||||||||| ||| |||||||||    
T  8846103 tttacaaagaaaaagatgtattgacacaaaaaccaaagcaatagaaagaaaaagtaaaaacat 8846041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 33076260 - 33076190
Alignment:
Q  153 acaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaa 223  Q
    ||||||| || |||||||||||||| | |||||| |||||| |  || |||||||| ||||||||||||||    
T  33076260 acaaccacaattttacaaagaaaattatgtattggcacaaatatcaaagtaatagagagagaaaataaaaa 33076190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 45640485 - 45640419
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaa 175  Q
    |||||||| |||| |||||| |||| ||| ||| |||||||| | ||||||||| ||||||||||||    
T  45640485 agagttgtgttatttgaacatctatatatgtgacaacttttgttgcaaccaaaattttacaaagaaa 45640419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 37187021 - 37186948
Alignment:
Q  118 ttatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacaca 191  Q
    |||| ||||||| |||||  || ||||||||||||   ||||||| |||| ||||||||||| |||||||||||    
T  37187021 ttatttgaacaattattttaataataacttttgatgataccaaaattttataaagaaaatgaggtattgacaca 37186948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 223
Target Start/End: Complemental strand, 37619719 - 37619614
Alignment:
Q  118 ttatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaa 217  Q
    |||| |||||| | || ||| ||| |||||||  ||||||||||| ||||||||| |||||| |||||| |||||| |  || | |||||| |||||||     
T  37619719 ttatttgaacatccatatatgtgacaacttttattacaaccaaaattttacaaaggaaatgaggtattggcacaaaaatcaacgcaatagagagagaaat 37619620  T
Q  218 taaaaa 223  Q
    ||||||    
T  37619619 taaaaa 37619614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 2571819 - 2571735
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaattta-caaagaaaatgaagtattgacacaaa 193  Q
    ||||||| |||| |||||| | ||  |||||| ||||||||  |||||||||| |||| |||||||||||| ||| |||||||||    
T  2571819 gagttgtgttatttgaacatccatgcatatgacaacttttgtgacaaccaaaattttaacaaagaaaatgaggtagtgacacaaa 2571735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 27533415 - 27533451
Alignment:
Q  153 acaaccaaaaatttacaaagaaaatgaagtattgaca 189  Q
    |||||||||| |||||||||||||||| |||||||||    
T  27533415 acaaccaaaattttacaaagaaaatgaggtattgaca 27533451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 30570706 - 30570642
Alignment:
Q  111 agttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaa 175  Q
    |||||| |||| ||||||   ||||||||||||| |||||| |||| ||||| ||||||||||||    
T  30570706 agttgtgttatttgaacattcatttatatgataatttttgaaacaatcaaaattttacaaagaaa 30570642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 185
Target Start/End: Complemental strand, 31975170 - 31975099
Alignment:
Q  113 ttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtatt 185  Q
    |||| |||| ||||||||||||| ||||||||||| | | ||||| | | ||||||||||||||||| |||||    
T  31975170 ttgtgttatttgaacaactattt-tatgataacttataagacaactatagatttacaaagaaaatgaggtatt 31975099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 44517848 - 44517932
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||||||| |||  | ||||||||||||  | ||| | ||||||||||||||||  | |||||||||||||    
T  44517848 agagttgtgttatttgaacaaccattcgtgtgataacttttgggataactataaatttacaaagaaaaatatgtattgacacaaa 44517932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 109 - 226
Target Start/End: Complemental strand, 26595533 - 26595416
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    |||||||| |||| |||||| | |||||||||| ||||||||| |||||||||| |||||||||||||||| ||||||||||||| || || | ||||||    
T  26595533 agagttgtgttatttgaacatccatttatatgacaacttttgaaacaaccaaaattttacaaagaaaatgaggtattgacacaaaaaccaaagcaataga 26595434  T
Q  209 aagagaaaataaaaacat 226  Q
     ||||||| |||||||||    
T  26595433 gagagaaagtaaaaacat 26595416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 4820551 - 4820467
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||||||||||||| |||||||||||||| |||| ||||| |||||||||||||||| | |||||||||||    
T  4820551 agagttgtgttatttgaacaactatttacatgataacttttgagacaatcaaaattttacaaagaaaatgaggcattgacacaaa 4820467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 16199634 - 16199550
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||||| | |||||||||| ||||||||| |||||||||| |||| ||||||||||| |||||||||||||    
T  16199634 agagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaaaatgaggtattgacacaaa 16199550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 11014891 - 11014961
Alignment:
Q  123 tgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||| |||||||||||||||||||||| |||| ||||| ||||  |||||||||| |||||||||||||    
T  11014891 tgaacatctatttatatgataacttttgagacaatcaaaattttatgaagaaaatgaggtattgacacaaa 11014961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 30423438 - 30423523
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||| |||| |||| |||||| |||||||| |||||||||||||||||| ||||  |||| ||||||||||| ||||||| |||||    
T  30423438 tagatttgtgttatttgaacatctatttatgtgataacttttgatacaatcaaagctttataaagaaaatgaggtattgatacaaa 30423523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 226
Target Start/End: Original strand, 22079451 - 22079567
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaa 209  Q
    ||||||| |||| |||||| | ||||| ||||  |||||||  |||||||||| ||| |||||||||||| ||||||||||||| |  || | ||||||     
T  22079451 gagttgtgttatttgaacatccatttagatgaccacttttgtgacaaccaaaattttgcaaagaaaatgatgtattgacacaaaaatcaaagcaatagag 22079550  T
Q  210 agagaaaataaaaacat 226  Q
    ||||||| |||||||||    
T  22079551 agagaaagtaaaaacat 22079567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 108 - 223
Target Start/End: Original strand, 32316814 - 32316929
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatag 207  Q
    ||||||||| |||| |||||| | || ||| ||| ||||||||  |||||||||| |||||||||||||||| ||| ||||||||| || || | |||||    
T  32316814 tagagttgtgttatttgaacatccatatatgtgacaacttttgtgacaaccaaaattttacaaagaaaatgaggtactgacacaaaaaccaaagcaatag 32316913  T
Q  208 aaagagaaaataaaaa 223  Q
    | ||| ||| ||||||    
T  32316914 agagataaagtaaaaa 32316929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 15974792 - 15974678
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    |||||||| |||| |||||| | || ||| | | ||||||||  |||||||||| ||||||||| |||||||||| | ||||||| || || | ||||||    
T  15974792 agagttgtgttatttgaacatccatatatgtaacaacttttgtgacaaccaaaattttacaaaggaaatgaagtagtaacacaaaaaccaaagcaataga 15974693  T
Q  209 aagagaaaataaaaa 223  Q
     ||||||||||||||    
T  15974692 gagagaaaataaaaa 15974678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 226
Target Start/End: Original strand, 3853217 - 3853311
Alignment:
Q  132 atttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaacat 226  Q
    |||||||||| ||||||||| ||||| || | ||||||||||||||||  |||||||||||| |  || | |||||| ||||||| | |||||||    
T  3853217 atttatatgacaacttttgagacaacaaagattttacaaagaaaatgagatattgacacaaaaatcaaagcaatagagagagaaagttaaaacat 3853311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 19367627 - 19367690
Alignment:
Q  161 aaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaacat 226  Q
    ||||||| ||||||||||| ||||||||| ||| |||||  ||||| |||||||||||||||||||    
T  19367627 aaatttataaagaaaatgaggtattgacataaaaactaa--taataaaaagagaaaataaaaacat 19367690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 30457666 - 30457605
Alignment:
Q  132 atttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||||| ||||||||| | |||||||| || ||| ||||||||| |||||||||||||    
T  30457666 atttatatgacaacttttgagataaccaaaatttcacatagaaaatgaggtattgacacaaa 30457605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 31883190 - 31883307
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    ||||||||||||| |||||||||||||   ||| || |||||  ||||||| || ||||||||||||| || || |||||||||| |  || | ||||||    
T  31883190 agagttgtattatttgaacaactatttgattgacaatttttgggacaaccataattttacaaagaaaaagaggtcttgacacaaaaatcaaagcaataga 31883289  T
Q  209 aagagaaaataaaaacat 226  Q
     ||||||| |||| ||||    
T  31883290 gagagaaagtaaatacat 31883307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 3552041 - 3552125
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaa 192  Q
    |||| |||| |||| |||||||| ||||  |||||||||||||  | || || ||||||||||||||||| | ||||||||||||    
T  3552041 tagaattgtgttatttgaacaaccatttggatgataacttttgtgataatcataaatttacaaagaaaataaggtattgacacaa 3552125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 193
Target Start/End: Original strand, 18737463 - 18737538
Alignment:
Q  118 ttatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||| |||||| | || ||| ||| ||||||||  |||||||||| |||||||||||||||| |||||| ||||||    
T  18737463 ttatttgaacatccatgtatgtgacaacttttgtgacaaccaaaattttacaaagaaaatgaggtattgtcacaaa 18737538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 5694072 - 5694122
Alignment:
Q  143 aacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    ||||||||| |||||| ||| ||||||||| |||||| |||||||||||||    
T  5694072 aacttttgagacaacctaaattttacaaaggaaatgaggtattgacacaaa 5694122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 277131 - 277058
Alignment:
Q  153 acaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaacat 226  Q
    |||||||||| ||||||||||||||||  |||||||||||| |  || | |||||| ||| ||| |||||||||    
T  277131 acaaccaaaattttacaaagaaaatgatatattgacacaaaaatcaaagcaatagagagaaaaattaaaaacat 277058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 20998084 - 20998145
Alignment:
Q  161 aaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaa 222  Q
    ||||||||||||||||||| ||||||| ||||| || || | |||||| ||||||| |||||    
T  20998084 aaatttacaaagaaaatgaggtattgatacaaaaaccaaagcaatagagagagaaagtaaaa 20998145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 34175249 - 34175322
Alignment:
Q  153 acaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaacat 226  Q
    |||||| ||| |||| ||||||||| |||||||| || ||| || || |||||||| |||| ||||||||||||    
T  34175249 acaacctaaattttataaagaaaattaagtattggcaaaaaaaccaaagtaatagagagagtaaataaaaacat 34175322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 2241936 - 2241996
Alignment:
Q  133 tttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||| |||||||||||||  ||||||||||   |||||||||||||| | |||||||||||    
T  2241936 tttacatgataacttttgtgacaaccaaaataatacaaagaaaatgaggcattgacacaaa 2241996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 226
Target Start/End: Original strand, 17551267 - 17551382
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaa 209  Q
    ||||||| |||| |||||| |||||| ||||| | | ||||  |||||||||| |||| ||||||||||| | ||||||||||| || ||   ||||||     
T  17551267 gagttgtgttatttgaacatctatttttatgacagcatttgtgacaaccaaaa-tttataaagaaaatgagggattgacacaaaaaccaaaacaatagag 17551365  T
Q  210 agagaaaataaaaacat 226  Q
    ||| ||| |||||||||    
T  17551366 agataaagtaaaaacat 17551382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 108 - 223
Target Start/End: Complemental strand, 11967 - 11852
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatag 207  Q
    |||||||||||||| |||||| ||||  |||||| ||||||||  || ||||||| |||||||||||||||| ||||||||||||| || || | |||||    
T  11967 tagagttgtattatttgaacatctataaatatgacaacttttgtgacgaccaaaattttacaaagaaaatgaggtattgacacaaaaaccaaagcaatag 11868  T
Q  208 aaagagaaaataaaaa 223  Q
    | ||||||||||||||    
T  11867 agagagaaaataaaaa 11852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 108 - 223
Target Start/End: Original strand, 11253428 - 11253543
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatag 207  Q
    |||||||||||||| |||||| ||||  |||||| ||||||||  || ||||||| |||||||||||||||| ||||||||||||| || || | |||||    
T  11253428 tagagttgtattatttgaacatctataaatatgacaacttttgtgacgaccaaaattttacaaagaaaatgaggtattgacacaaaaaccaaagcaatag 11253527  T
Q  208 aaagagaaaataaaaa 223  Q
    | ||||||||||||||    
T  11253528 agagagaaaataaaaa 11253543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 29025445 - 29025327
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatag 207  Q
    ||||||||| |||| | |||| | |||||||||| ||||||||  |||||||||| |||||||||||||||| ||||||||||||| || || | |||||    
T  29025445 tagagttgtgttatttaaacatccatttatatgacaacttttgggacaaccaaaattttacaaagaaaatgaggtattgacacaaaaaccaaagcaatag 29025346  T
Q  208 aaagagaaaataaaaacat 226  Q
    | ||||||  |||||||||    
T  29025345 agagagaaggtaaaaacat 29025327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 37133749 - 37133866
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    |||||||| |||| | |||| | ||||| |||| ||||||||  |||||||||| ||||||||||||||||  |||||||||||| |  || | ||||||    
T  37133749 agagttgtgttattttaacatccatttagatgacaacttttgtgacaaccaaaattttacaaagaaaatgatatattgacacaaaaatcaaagcaataga 37133848  T
Q  209 aagagaaaataaaaacat 226  Q
    |||||||| |||||||||    
T  37133849 aagagaaagtaaaaacat 37133866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 10839369 - 10839486
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    ||||| || |||| |||||| | |||| |||||||| |||||| ||||| |||| |||||||||||||| || ||||| |||||| || || | ||||||    
T  10839369 agagtagtgttatttgaacatccatttttatgataatttttgagacaactaaaattttacaaagaaaattaaatattggcacaaaaaccaaagcaataga 10839468  T
Q  209 aagagaaaataaaaacat 226  Q
     ||||||| |||||||||    
T  10839469 tagagaaagtaaaaacat 10839486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 43632224 - 43632309
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    ||||||||  |||| | ||||||||||| ||||| |||||||||||||| || | ||||||||| ||||||| |||||||||||||    
T  43632224 tagagttgggttatctaaacaactatttttatgacaacttttgatacaatcatagatttacaaataaaatgaggtattgacacaaa 43632309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 34639718 - 34639600
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatag 207  Q
    ||||||| | |||| |||||| | ||||| ||||||| |||||| | || ||||| |||||||| ||||||| ||| ||||||||  || || |||||||    
T  34639718 tagagttatgttatttgaacatccatttacatgataatttttgagagaatcaaaattttacaaataaaatgaggtagtgacacaataaccaaagtaatag 34639619  T
Q  208 aaagagaaaataaaaacat 226  Q
    | |||||||||||| ||||    
T  34639618 agagagaaaataaacacat 34639600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 13106664 - 13106580
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||||||| |||||  ||| |||||||   ||||||| |||||||||||||||| || |||||||||||||    
T  13106664 agagttgtgttatttgaacaaccatttaggtgacaacttttataacaaccataaatttacaaagaaaaagaggtattgacacaaa 13106580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 32133505 - 32133425
Alignment:
Q  111 agttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacaca 191  Q
    |||||| |||| |||||| | ||||||||||||| |||||| | |||||||| |||||||| ||||| | |||||||||||    
T  32133505 agttgtgttatttgaacatccatttatatgataaattttgagataaccaaaattttacaaataaaataaggtattgacaca 32133425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 36660367 - 36660451
Alignment:
Q  139 tgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaa 223  Q
    ||||||||||||  |||| ||||| |||| ||||||||||||||||||||||||  || || | |||||| ||||||| ||||||    
T  36660367 tgataacttttgtgacaatcaaaattttataaagaaaatgaagtattgacacaataaccaaagcaatagagagagaaagtaaaaa 36660451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 223
Target Start/End: Complemental strand, 34186792 - 34186677
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatag 207  Q
    ||||||||| |||| |||||| | ||  || ||| ||||||||  |||| ||||| ||| ||||| |||||| ||| ||||||||| || || |||||||    
T  34186792 tagagttgtgttatttgaacatccatacatgtgacaacttttgtgacaatcaaaattttgcaaaggaaatgaggtagtgacacaaaaaccaaagtaatag 34186693  T
Q  208 aaagagaaaataaaaa 223  Q
    | ||||||||||||||    
T  34186692 agagagaaaataaaaa 34186677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 3381459 - 3381532
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtat 184  Q
    ||||| ||||||  ||||| | |||||||||| |||| ||||||||||| ||| |||||||||||||||||||||    
T  3381459 gagttatattattagaacatccatttatatgacaactcttgatacaacc-aaattttacaaagaaaatgaagtat 3381532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 43397921 - 43397851
Alignment:
Q  153 acaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaa 223  Q
    |||||||||| ||||||||||||||||  || || |||||| || || |||||||||||||||| ||||||    
T  43397921 acaaccaaaattttacaaagaaaatgagatagtggcacaaaaaccaaagtaatagaaagagaaagtaaaaa 43397851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 10731686 - 10731616
Alignment:
Q  153 acaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaa 223  Q
    |||| ||||| ||||||||| |||||||||||||||||||| |  || | |||||| ||||||| ||||||    
T  10731686 acaatcaaaattttacaaaggaaatgaagtattgacacaaaaatcaaagcaatagagagagaaagtaaaaa 10731616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 24479381 - 24479323
Alignment:
Q  135 tatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    ||||||||||||||||  ||||| |||| ||||||||| ||||||  ||||||||||||    
T  24479381 tatatgataacttttgtgacaactaaaattttacaaaggaaatgagatattgacacaaa 24479323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 223
Target Start/End: Complemental strand, 22719623 - 22719510
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaa 209  Q
    ||||||| |||| |||||| | || ||| ||| ||||||||  | |||||||| |||||||||||||||| ||| |  |||||| || || | ||||||     
T  22719623 gagttgtgttatttgaacagccatatatgtgacaacttttgtgataaccaaaattttacaaagaaaatgaggtagttgcacaaaaaccaaagcaatagag 22719524  T
Q  210 agagaaaataaaaa 223  Q
    ||||||| ||||||    
T  22719523 agagaaagtaaaaa 22719510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 38958482 - 38958555
Alignment:
Q  153 acaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaacat 226  Q
    |||||||  |||||||||||||||||| ||||  ||||||| || || | |||| ||||||||| |||||||||    
T  38958482 acaaccatcaatttacaaagaaaatgaggtatgaacacaaaaaccaaagcaataaaaagagaaagtaaaaacat 38958555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 2883328 - 2883288
Alignment:
Q  153 acaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    ||||| |||| |||||||||||||||||||||| |||||||    
T  2883328 acaactaaaattttacaaagaaaatgaagtattaacacaaa 2883288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 3151238 - 3151278
Alignment:
Q  153 acaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    ||||| |||| |||||||||||||||||||||| |||||||    
T  3151238 acaactaaaattttacaaagaaaatgaagtattaacacaaa 3151278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 23754617 - 23754677
Alignment:
Q  133 tttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    ||||||||| ||| ||||  |||||||||| ||||||||||||||||   |||||||||||    
T  23754617 tttatatgacaacctttgcaacaaccaaaattttacaaagaaaatgagtgattgacacaaa 23754677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 39856222 - 39856138
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||||||||||||  |||||||||||| | |||| ||  |||| ||||||||||  |  ||||||||||||    
T  39856222 agagttgtgttatttgaacaactattttaatgataacttttaagacaatcatgaattaacaaagaaaaatagatattgacacaaa 39856138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 226
Target Start/End: Complemental strand, 40517437 - 40517325
Alignment:
Q  114 tgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagag 213  Q
    |||||||| |||||||  |||| ||||| | ||| | | ||||||| ||||||||||||||||  |  ||||||||| || |  || | ||||||||||     
T  40517437 tgtattatttgaacaatcatttttatgacatcttataagacaaccataaatttacaaagaaaagtagatattgacacgaaaatcaaagcaatagaaagat 40517338  T
Q  214 aaaataaaaacat 226  Q
    |||||||||||||    
T  40517337 aaaataaaaacat 40517325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 110 - 226
Target Start/End: Original strand, 53249 - 53365
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaa 209  Q
    ||||||| |||| ||||||  |||||||||||||| |||| | ||||||||||||||| |||||||||||  |||||||||||| |||||   || |||     
T  53249 gagttgtgttatttgaacatttatttatatgataagtttttagacaaccaaaaatttataaagaaaatgagatattgacacaaaaactaaaacaaaagag 53348  T
Q  210 agagaaaataaaaacat 226  Q
    |||||||||||||||||    
T  53349 agagaaaataaaaacat 53365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 39655008 - 39654924
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||||||||||||| ||||||| |||| | ||||||| ||||||||||||||||||| |||||||||||||    
T  39655008 agagttgtgttatttgaacaactatttagatgataatttttaagacaaccataaatttacaaagaaaatgaggtattgacacaaa 39654924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 34616745 - 34616661
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||||| |||||||||||| ||||||||| |||||||||| |||| |||||||||||  ||||||||||||    
T  34616745 agagttgtgttatttgaacatctatttatatgacaacttttgagacaaccaaaattttataaagaaaatgagatattgacacaaa 34616661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 38382505 - 38382421
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||||| | |||||||||| ||||||||| |||||||||| |||| ||||||||||| |||||||||||||    
T  38382505 agagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaaaatgaggtattgacacaaa 38382421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 47182025 - 47181941
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||||| | |||||||||| ||||||||| |||||||||| |||| ||||||||||| |||||||||||||    
T  47182025 agagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaaaatgaggtattgacacaaa 47181941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 48402084 - 48402168
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||||| | |||||||||| ||||||||| |||||||||| |||| ||||||||||| |||||||||||||    
T  48402084 agagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaaaatgaggtattgacacaaa 48402168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 19473866 - 19473927
Alignment:
Q  132 atttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||||| ||||||||| |||| ||||| ||||||||||||||||||||||||||||||    
T  19473866 atttatatgacaacttttgagacaatcaaaattttacaaagaaaatgaagtattgacacaaa 19473927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 37997424 - 37997324
Alignment:
Q  123 tgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaa 222  Q
    |||||| |||| ||| |||||| ||||| ||||||||||| |||||||||||||||| ||||||||||||| |  || | |||||| ||||||| |||||    
T  37997424 tgaacatctatatatgtgataatttttgttacaaccaaaattttacaaagaaaatgaggtattgacacaaaaatcaaagcaatagagagagaaagtaaaa 37997325  T
Q  223 a 223  Q
    |    
T  37997324 a 37997324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 56363932 - 56364016
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||||| | ||||| |||| ||||||||| |||||||||| |||| ||||||||||| |||||||||||||    
T  56363932 agagttgtgttatttgaacatccatttacatgacaacttttgagacaaccaaaattttataaagaaaatgaggtattgacacaaa 56364016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 223
Target Start/End: Complemental strand, 15175729 - 15175616
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaa 209  Q
    |||||||||||| |||||| | || ||| ||| |||||||| ||||||||||| ||||||||| |||||| |||||  |||||| || || | |||||||    
T  15175729 gagttgtattatttgaacatccatatatgtgacaacttttgttacaaccaaaattttacaaaggaaatgaggtattagcacaaaaacaaaagcaatagaa 15175630  T
Q  210 agagaaaataaaaa 223  Q
    ||| ||| ||||||    
T  15175629 agataaagtaaaaa 15175616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 1627442 - 1627562
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgat---acaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaat 205  Q
    |||||||| |||| |||||||||||||  |||| |||||||| |   ||||||| ||||||||||||||||||| |||||| |||||| || || | ||     
T  1627442 agagttgtgttatttgaacaactatttggatgacaacttttgttgtgacaaccataaatttacaaagaaaatgaggtattggcacaaaaaccaaagcaac 1627541  T
Q  206 agaaagagaaaataaaaacat 226  Q
    ||| || |||| |||||||||    
T  1627542 agagagggaaagtaaaaacat 1627562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 26732409 - 26732295
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    |||||||| |||| |||||| | || ||| ||| ||||||||  |||||||||| |||||||||||||||| ||| || |||||| || ||   ||||||    
T  26732409 agagttgtgttatttgaacatccatatatgtgacaacttttgtgacaaccaaaattttacaaagaaaatgaggtagtggcacaaaaaccaaaacaataga 26732310  T
Q  209 aagagaaaataaaaa 223  Q
     ||||||||||||||    
T  26732309 gagagaaaataaaaa 26732295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 39478595 - 39478537
Alignment:
Q  135 tatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    ||||||| ||||||||  |||||||||| |||||||||||||||| |||||||||||||    
T  39478595 tatatgacaacttttgtgacaaccaaaattttacaaagaaaatgaggtattgacacaaa 39478537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 208
Target Start/End: Original strand, 53801647 - 53801745
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    ||||||| |||| |||||| | || ||| ||| ||||||||  |||||||||| ||||||||| |||||| ||||||||||||| ||||| | ||||||    
T  53801647 gagttgtgttatttgaacatccatatatgtgacaacttttgtgacaaccaaaattttacaaaggaaatgaggtattgacacaaaaactaaagcaataga 53801745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 193
Target Start/End: Original strand, 56474656 - 56474738
Alignment:
Q  111 agttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||| |||| |||||| ||||| | || | || |||||| |||||||||| |||||||||||||||| |||||||||||||    
T  56474656 agttgtgttatttgaacatctattcacataacaatttttgagacaaccaaaactttacaaagaaaatgaggtattgacacaaa 56474738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 336693 - 336778
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    ||||||||| |||| ||||||||| ||| ||||| |||||||||||||||||  ||||| ||||||||| |  |||||| ||||||    
T  336693 tagagttgtgttatttgaacaactttttttatgacaacttttgatacaaccattaatttgcaaagaaaaagtggtattggcacaaa 336778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 10250436 - 10250516
Alignment:
Q  143 aacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaa 223  Q
    ||||||||  |||||||||| |||||||||||||||||||| || |||||| || || | |||||| ||||||| ||||||    
T  10250436 aacttttgtgacaaccaaaattttacaaagaaaatgaagtagtggcacaaaaaccaaagcaatagagagagaaagtaaaaa 10250516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 35897870 - 35897768
Alignment:
Q  123 tgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaa 222  Q
    |||||||| |||||||||||||||||||  ||||| | |  ||||||| |||||||||||||||||||||| |  || | |||||||| | ||| |||||    
T  35897870 tgaacaaccatttatatgataacttttgggacaactatat-tttacaatgaaaatgaagtattgacacaaaaatcaaagcaatagaaataaaaagtaaaa 35897772  T
Q  223 acat 226  Q
    ||||    
T  35897771 acat 35897768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 515532 - 515622
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaa 199  Q
    |||||||| |||| |||| |  ||||||||||| ||||||||| | || || ||||||| ||||||||||  ||||||||||||| |||||    
T  515532 agagttgtgttatttgaatatttatttatatgacaacttttgaaataatcataaatttataaagaaaatgtggtattgacacaaaaactaa 515622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 2575677 - 2575747
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatga 179  Q
    |||||||| |||| |||||| |||||||||||| ||||||||  ||||| |||  ||||||||||||||||    
T  2575677 agagttgtgttatttgaacatctatttatatgacaacttttgtgacaactaaagttttacaaagaaaatga 2575747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 10474043 - 10474113
Alignment:
Q  153 acaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaa 223  Q
    ||||||| |||||||||||||||| |||||||||||||||| |  || |||||||| ||| ||| ||||||    
T  10474043 acaaccataaatttacaaagaaaaagaagtattgacacaaaaatcaaagtaatagagagaaaaagtaaaaa 10474113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 32130148 - 32130210
Alignment:
Q  131 tatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    ||||||||||  ||||||||| |||||||||| | |||||||||||||| ||||||| |||||    
T  32130148 tatttatatgtcaacttttgaaacaaccaaaattatacaaagaaaatgatgtattgatacaaa 32130210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 26724858 - 26724943
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    ||||||||| |||| |||||| | || ||| ||||||||||||  ||||| |||| ||||||||| |||||| ||| |||||||||    
T  26724858 tagagttgtgttatttgaacatccatatatgtgataacttttgtaacaactaaaattttacaaaggaaatgaggtagtgacacaaa 26724943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 226
Target Start/End: Complemental strand, 42853761 - 42853644
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    |||||||| |||| |||||| | ||||   ||| || |||||| |||| ||||| |||| ||||||||||| ||||||||||||| || || | ||||||    
T  42853761 agagttgtgttatttgaacatccatttgagtgacaatttttgagacaatcaaaattttataaagaaaatgaggtattgacacaaaaaccaaagcaataga 42853662  T
Q  209 aagagaaaataaaaacat 226  Q
     ||||||| | |||||||    
T  42853661 gagagaaagtgaaaacat 42853644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 189
Target Start/End: Complemental strand, 27371325 - 27371245
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgaca 189  Q
    |||| ||| |||| |||||||| |||||| ||| ||||| ||| ||||||| ||||||||||||||||  | |||||||||    
T  27371325 agaggtgtgttatttgaacaacaatttatttgagaacttatgagacaaccataaatttacaaagaaaagtaggtattgaca 27371245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 223
Target Start/End: Original strand, 50721630 - 50721745
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatag 207  Q
    ||||||||| |||| |||||| |  ||||||||| ||| ||||  ||||| |||| ||||||||||||||||   ||||||||||| || || | | |||    
T  50721630 tagagttgtgttatttgaacatcattttatatgacaacctttgcaacaactaaaattttacaaagaaaatgagtgattgacacaaaaaccaaagcagtag 50721729  T
Q  208 aaagagaaaataaaaa 223  Q
    | ||||||| ||||||    
T  50721730 agagagaaagtaaaaa 50721745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 27051007 - 27051057
Alignment:
Q  143 aacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    ||||||||  |||||||||| ||||||||||||||||  ||||||||||||    
T  27051007 aacttttgtgacaaccaaaattttacaaagaaaatgagatattgacacaaa 27051057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 46634240 - 46634170
Alignment:
Q  153 acaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaa 223  Q
    ||||| |||| ||||||||| |||||| ||| ||||||||| |  || |||||||||||||||| ||||||    
T  46634240 acaactaaaattttacaaaggaaatgaggtagtgacacaaaaatcaaagtaatagaaagagaaagtaaaaa 46634170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 50831641 - 50831759
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatag 207  Q
    ||||||||| |||| |||||||| ||||   ||| ||||||||  ||||||| || ||||||||||||| || || |||||||||| |  || | |||||    
T  50831641 tagagttgtgttatttgaacaaccatttgattgacaacttttgggacaaccataattttacaaagaaaaagaggtcttgacacaaaaatcaaagcaatag 50831740  T
Q  208 aaagagaaaataaaaacat 226  Q
    | ||||||| |||| ||||    
T  50831741 agagagaaagtaaagacat 50831759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 31995804 - 31995892
Alignment:
Q  113 ttgtattatatgaacaactatttatatg--ataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaa 199  Q
    |||| |||| |||||||| ||||||||   | ||||||||| ||||  |||| |||| ||||||||||| ||||||||||||| |||||    
T  31995804 ttgtgttatttgaacaaccatttatatataacaacttttgagacaattaaaattttagaaagaaaatgaggtattgacacaaaaactaa 31995892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 38376378 - 38376447
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatga 179  Q
    ||||||| |||| |||||| |||| ||| |||||| |||||  |||| ||||| ||||||||||||||||    
T  38376378 gagttgtgttatttgaacatctatatatgtgataatttttgtgacaatcaaaattttacaaagaaaatga 38376447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 12387596 - 12387636
Alignment:
Q  153 acaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    ||||||| | ||||||||||||||||| |||||||||||||    
T  12387596 acaaccatatatttacaaagaaaatgaggtattgacacaaa 12387636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 19748820 - 19748752
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaa 176  Q
    ||||| ||| |||| ||||||| |||||   ||||||||||||| |||| || ||||||||||||||||    
T  19748820 tagagatgtgttatttgaacaattattttggtgataacttttgaaacaatcataaatttacaaagaaaa 19748752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 19790986 - 19791054
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaa 176  Q
    ||||| ||| |||| ||||||| |||||   ||||||||||||| |||| || ||||||||||||||||    
T  19790986 tagagatgtgttatttgaacaattattttggtgataacttttgaaacaatcataaatttacaaagaaaa 19791054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 29175409 - 29175325
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| ||||||   || ||| ||| ||||||||  |||||||||| ||||||||| ||||||  ||||||||||||    
T  29175409 agagttgtgttatttgaacattcatatatgtgacaacttttgtgacaaccaaaattttacaaagtaaatgagctattgacacaaa 29175325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 39447915 - 39447848
Alignment:
Q  124 gaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaa 192  Q
    ||||||| |||||| |||||||| | || | || ||||| |||||||||||||||| ||||||||||||    
T  39447915 gaacaaccatttatgtgataactct-gagataatcaaaattttacaaagaaaatgaggtattgacacaa 39447848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 47744399 - 47744467
Alignment:
Q  109 agagttgtattatatgaacaactatttatat-gataacttttgatacaaccaaaaatttacaaagaaaa 176  Q
    |||||||| |||| |||||||||||||  || |||||||||||  ||||||| || |||||||||||||    
T  47744399 agagttgtgttatttgaacaactattttgattgataacttttgggacaaccataattttacaaagaaaa 47744467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 110 - 226
Target Start/End: Complemental strand, 40417957 - 40417841
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaa 209  Q
    ||||||| |||| |||||| ||||||||| || ||||||||| |||||||||| |||||||||||| ||| ||||||||| ||| || || | ||||||     
T  40417957 gagttgtgttatttgaacatctatttatacgacaacttttgagacaaccaaaattttacaaagaaagtgaggtattgacataaaaaccaaagcaatagag 40417858  T
Q  210 agagaaaataaaaacat 226  Q
    | ||||| |||||||||    
T  40417857 aaagaaagtaaaaacat 40417841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 46022154 - 46022238
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||||| | |||||||||| ||||||||| |||||||||| |||| ||||||||||| |||||||||||||    
T  46022154 agagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaaaatgaggtattgacacaaa 46022238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 108 - 223
Target Start/End: Original strand, 35072248 - 35072363
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatag 207  Q
    ||||||||| |||| |||||| | |||||||||| ||||||||| |||||||||| |||| |||||||||||   ||||||||||| |  || | |||||    
T  35072248 tagagttgtgttatctgaacatccatttatatgacaacttttgaaacaaccaaaattttataaagaaaatgagacattgacacaaaaatcaaagcaatag 35072347  T
Q  208 aaagagaaaataaaaa 223  Q
    ||||||||| ||||||    
T  35072348 aaagagaaagtaaaaa 35072363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 226
Target Start/End: Complemental strand, 28031058 - 28030943
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    |||||||| |||| |||||||||||||  ||||||| |||||  |||| || || |||||||||||||||| ||||| ||||||| ||||| ||||||||    
T  28031058 agagttgttttatttgaacaactatttgaatgataa-ttttgggacaatcataa-tttacaaagaaaatgaggtattaacacaaaaactaatgtaataga 28030961  T
Q  209 aagagaaaataaaaacat 226  Q
     ||| |||||||||||||    
T  28030960 gagaaaaaataaaaacat 28030943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 7701728 - 7701644
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||||| | |||||||||| ||||||||| |||||||||  |||| ||||||||||| |||||||||||||    
T  7701728 agagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaagttttataaagaaaatgaggtattgacacaaa 7701644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 226
Target Start/End: Complemental strand, 1284598 - 1284483
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    |||||||| |||| |||||||| |||| |||||||||||||||||||| || ||||||  |||||||| |  ||||||||||||| | ||| | |||||     
T  1284598 agagttgtgttatttgaacaaccatttttatgataacttttgatacaatcataaatttgaaaagaaaaagtggtattgacacaaaaattaaagcaatag- 1284500  T
Q  209 aagagaaaataaaaacat 226  Q
     ||||||| |||||||||    
T  1284499 -agagaaagtaaaaacat 1284483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 108 - 223
Target Start/End: Original strand, 35098589 - 35098704
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatag 207  Q
    ||||||||| |||| |||| | | |||||||||| ||||||||| |||||||||| |||| | |||||||||   ||||||||||| |  || | |||||    
T  35098589 tagagttgtgttatttgaatatccatttatatgacaacttttgaaacaaccaaaattttatatagaaaatgagacattgacacaaaaatcaaagcaatag 35098688  T
Q  208 aaagagaaaataaaaa 223  Q
    ||||||||| ||||||    
T  35098689 aaagagaaagtaaaaa 35098704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 108 - 223
Target Start/End: Complemental strand, 41018849 - 41018734
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatag 207  Q
    ||||||||| |||| |||| |||||||||  ||| |||||||   |||| || |||||||||||||||| || ||||| ||||||| || || |||||||    
T  41018849 tagagttgtgttatttgaataactatttaggtgacaacttttatgacaatcataaatttacaaagaaaaagaggtattaacacaaaaaccaaagtaatag 41018750  T
Q  208 aaagagaaaataaaaa 223  Q
    | ||||||| ||||||    
T  41018749 agagagaaagtaaaaa 41018734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 35207679 - 35207601
Alignment:
Q  113 ttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||| |||| |||||| | ||||||| |||||  ||||| |||||||||| |||||||| |||||||||||||||||||||    
T  35207679 ttgtgttatttgaacatccatttataggataa--tttgagacaaccaaaattttacaaataaaatgaagtattgacacaaa 35207601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 41189460 - 41189544
Alignment:
Q  139 tgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaa 223  Q
    |||||||||||   |||| ||||| ||||||||| |||||| ||||||||||||| ||||| | |||||| ||||||| ||||||    
T  41189460 tgataacttttatgacaatcaaaattttacaaaggaaatgaggtattgacacaaaaactaaagcaatagagagagaaagtaaaaa 41189544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 223
Target Start/End: Complemental strand, 31445503 - 31445388
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatag 207  Q
    ||||||||| |||| |||||| |  |||||||||||| |||||  |||| ||||| ||||||||||||||||   ||||||||||| |  || | |||||    
T  31445503 tagagttgtgttatttgaacatcattttatatgataatttttgcaacaatcaaaattttacaaagaaaatgagtgattgacacaaaaatcaaagcaatag 31445404  T
Q  208 aaagagaaaataaaaa 223  Q
    | ||||||| ||||||    
T  31445403 agagagaaagtaaaaa 31445388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 48062211 - 48062124
Alignment:
Q  139 tgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaacat 226  Q
    |||||| |||||| |||| ||||| |||| ||||||||||| ||||||||||||| || ||   |||||| ||||||| |||||||||    
T  48062211 tgataatttttgagacaatcaaaattttataaagaaaatgaggtattgacacaaaaaccaaaacaatagagagagaaagtaaaaacat 48062124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 35627906 - 35627991
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    ||||||||| |||| ||||||||||| |   ||||||||||||| | ||||| || |||| |||||||| || |||||||||||||    
T  35627906 tagagttgtgttatttgaacaactatctgattgataacttttgagataaccataattttataaagaaaaagaggtattgacacaaa 35627991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 42553078 - 42552998
Alignment:
Q  113 ttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||| |||| |||||||| |||||  ||||||||||||| | ||||| || ||||||||||||| || |||||| ||||||    
T  42553078 ttgtgttatttgaacaaccatttaattgataacttttgagaaaaccataattttacaaagaaaaagaggtattggcacaaa 42552998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 44189227 - 44189311
Alignment:
Q  139 tgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaa 223  Q
    ||||||||||||  |||| ||||||||| ||||| ||||||  || ||||||||| || || |||||||| ||||||| ||||||    
T  44189227 tgataacttttgtgacaatcaaaaattttcaaaggaaatgagttagtgacacaaaaaccaaagtaatagagagagaaagtaaaaa 44189311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 223
Target Start/End: Complemental strand, 11326085 - 11325971
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatag 207  Q
    ||||||| | |||| | |||||| |||||| | ||||||||||| ||||  | || ||||||||||||| ||  ||||||||||||||| ||   |||||    
T  11326085 tagagttatgttatttaaacaaccatttat-taataacttttgagacaattataattttacaaagaaaaagagatattgacacaaacacaaaaacaatag 11325987  T
Q  208 aaagagaaaataaaaa 223  Q
    ||||| ||||||||||    
T  11325986 aaagaaaaaataaaaa 11325971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 41863537 - 41863600
Alignment:
Q  130 ctatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||||||| ||||||| | |||| ||||| |||||||| ||||||| |||||| ||||||    
T  41863537 ctatttatatgacaacttttaagacaatcaaaattttacaaataaaatgaggtattggcacaaa 41863600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 24614202 - 24614316
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatag 207  Q
    ||||||||| |||| ||||||   || ||| ||||||||||||  | || ||||| ||||||||| |||||| ||| ||||||||| || || | |||||    
T  24614202 tagagttgtgttatttgaacattcatatatgtgataacttttgtgataatcaaaattttacaaaggaaatgaggtagtgacacaaaaaccaaagcaatag 24614301  T
Q  208 aaagagaaaataaaa 222  Q
    |  ||||||||||||    
T  24614302 agtgagaaaataaaa 24614316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 43159463 - 43159575
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgat-acaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    ||||||| |||| |||||||| |||||  ||| |||||| ||| ||||||| |||||||||||||||| || ||||||| ||||| || || | ||||||    
T  43159463 gagttgtgttatttgaacaaccatttaggtgacaacttt-gatgacaaccataaatttacaaagaaaaagaggtattgatacaaa-accaaagcaataga 43159560  T
Q  209 aagagaaaataaaaa 223  Q
     ||||||| ||||||    
T  43159561 gagagaaagtaaaaa 43159575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 44649231 - 44649330
Alignment:
Q  125 aacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaac 224  Q
    |||| ||||||  |||| ||||||||| ||||| |||| |||| ||||||||| || |||||||||||| || || |||| ||  ||||||| |||||||    
T  44649231 aacatctattttcatgacaacttttgagacaactaaaattttataaagaaaattaaatattgacacaaaaaccaaagtaaaag--agagaaagtaaaaac 44649328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 20337495 - 20337430
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaa 174  Q
    |||| ||| |||| ||||||||||||| ||||| ||||| ||| | ||||| ||||||||||||||    
T  20337495 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 20337430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 32803870 - 32803793
Alignment:
Q  112 gttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgaca 189  Q
    ||||| |||| |||||| | |||||||||| ||||||||| ||||  |||| |||||| | ||||| |||||||||||    
T  32803870 gttgtgttatttgaacatccatttatatgacaacttttgaaacaattaaaattttacataaaaaataaagtattgaca 32803793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 17626170 - 17626086
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||||| | |||||||||| ||||||||| |||||||||| |||| ||||||||||| |||||||||||||    
T  17626170 agagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaaaatgaggtattgacacaaa 17626086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 33655300 - 33655418
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagta-ttgacacaaacactaaggtaatag 207  Q
    |||||||| |||| |||| |||||||| |||||||||||||| |||||||| ||||||| ||||||||||| ||| |||| ||||| || ||   ||||     
T  33655300 agagttgtgttatttgaataactatttttatgataacttttggtacaaccataaatttataaagaaaatgaggtatttgatacaaaaaccaaaacaatat 33655399  T
Q  208 aaagagaaaataaaaacat 226  Q
    || ||||||||||||||||    
T  33655400 aatgagaaaataaaaacat 33655418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 7552854 - 7552938
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||||| | ||||| |||| ||||||||  |||||||||| ||| |||||||||||| |||||||||||||    
T  7552854 agagttgtgttatttgaacatccatttagatgacaacttttgtgacaaccaaaattttgcaaagaaaatgatgtattgacacaaa 7552938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 226
Target Start/End: Complemental strand, 27488064 - 27487954
Alignment:
Q  116 tattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaa 215  Q
    |||||| |||||| |||||| |||||||| |||||| | ||| |||| |||||||||||||| || ||||| |||||| || || | |||||| ||||||    
T  27488064 tattatttgaacatctatttttatgataatttttgagataactaaaattttacaaagaaaattaaatattggcacaaaaaccaaagcaatagagagagaa 27487965  T
Q  216 aataaaaacat 226  Q
    | |||| ||||    
T  27487964 agtaaatacat 27487954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 226
Target Start/End: Complemental strand, 13310063 - 13309950
Alignment:
Q  113 ttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaaga 212  Q
    |||| |||| |||||| | ||||| |||| || |||||| |||| ||||  |||||||||||||||| ||||| ||||||| || || ||| |||| |||    
T  13310063 ttgtgttatttgaacatccatttagatgacaatttttgagacaatcaaatttttacaaagaaaatgaggtattaacacaaaaaccaaagtagtagagaga 13309964  T
Q  213 gaaaataaaaacat 226  Q
    |||| |||||||||    
T  13309963 gaaagtaaaaacat 13309950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 226
Target Start/End: Complemental strand, 39591864 - 39591747
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    |||||||| |||| |||||| |||||||||||| ||| ||||  |||||||||  ||||||||||||||||   ||||||||| | || || | ||||||    
T  39591864 agagttgtgttatttgaacatctatttatatgacaacctttgtgacaaccaaagttttacaaagaaaatgagagattgacacacaaaccaaagcaataga 39591765  T
Q  209 aagagaaaataaaaacat 226  Q
     ||||||| ||| |||||    
T  39591764 gagagaaagtaacaacat 39591747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 226
Target Start/End: Complemental strand, 39592256 - 39592139
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    |||||||| |||| |||||| |||||||||||| ||| ||||  |||||||||  ||||||||||||||||   ||||||||| | || || | ||||||    
T  39592256 agagttgtgttatttgaacatctatttatatgacaacctttgtgacaaccaaagttttacaaagaaaatgagagattgacacacaaaccaaagcaataga 39592157  T
Q  209 aagagaaaataaaaacat 226  Q
     ||||||| ||| |||||    
T  39592156 gagagaaagtaacaacat 39592139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 226
Target Start/End: Complemental strand, 33599145 - 33599030
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaa 209  Q
    |||||| ||||| |||||||| ||||||||||||| ||||   ||||| | |||||||||||||||| ||  |||||||||||| | ||| | ||||||     
T  33599145 gagttgcattatttgaacaaccatttatatgataatttttatgacaactataaatttacaaagaaaaagagatattgacacaaa-attaaagcaatagag 33599047  T
Q  210 agagaaaataaaaacat 226  Q
    ||| ||| |||||||||    
T  33599046 agaaaaagtaaaaacat 33599030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 41321395 - 41321332
Alignment:
Q  153 acaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaa 216  Q
    |||||||||| ||||||||| |||||| ||||||||||||| || || |||||||| |||||||    
T  41321395 acaaccaaaattttacaaaggaaatgaggtattgacacaaaaaccaaagtaatagagagagaaa 41321332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 1671726 - 1671612
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    |||||||| |||| |||||| | || ||| ||| ||||||||  |||| ||||| ||||||||| |||||| ||| ||||||||| || ||   ||||||    
T  1671726 agagttgtgttatttgaacatccatatatgtgacaacttttgtgacaatcaaaattttacaaaggaaatgaggtactgacacaaaaaccaaaacaataga 1671627  T
Q  209 aagagaaaataaaaa 223  Q
    |||||||| ||||||    
T  1671626 aagagaaagtaaaaa 1671612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 28306020 - 28306126
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaa 209  Q
    ||||||| |||| |||||| | || ||| ||| ||||||||  |||||||||| |||||||||||||||| ||| || |||||| || || | ||||||     
T  28306020 gagttgtgttatttgaacatccatatatgtgacaacttttgtgacaaccaaaattttacaaagaaaatgaggtagtggcacaaagaccaaagcaatagag 28306119  T
Q  210 agagaaa 216  Q
    |||||||    
T  28306120 agagaaa 28306126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 7287077 - 7287190
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaa 209  Q
    ||||||| |||| ||||||   || ||| ||| ||||||||  |||||||||| |||||||||||||||| ||| ||||||||| || ||   ||||||     
T  7287077 gagttgtgttatttgaacattcatatatgtgacaacttttgtgacaaccaaaattttacaaagaaaatgaggtagtgacacaaaaaccaaaacaatagag 7287176  T
Q  210 agagaaaataaaaa 223  Q
    ||||||| ||||||    
T  7287177 agagaaagtaaaaa 7287190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 3565234 - 3565190
Alignment:
Q  143 aacttttgatacaaccaaaaatttacaaagaaaatgaagtattga 187  Q
    ||||||||| |||||||||| |||||||||||||||| |||||||    
T  3565234 aacttttgagacaaccaaaattttacaaagaaaatgaggtattga 3565190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 14051232 - 14051316
Alignment:
Q  139 tgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaa 223  Q
    ||||||||||||  |||||||||| |||||||||||||||| ||| || |||||| || ||   |||||| ||||||| ||||||    
T  14051232 tgataacttttgtgacaaccaaaattttacaaagaaaatgaggtagtggcacaaaaaccaaaacaatagagagagaaagtaaaaa 14051316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 21353294 - 21353213
Alignment:
Q  143 aacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaacat 226  Q
    ||||||||  ||||||| || ||||||||||||| || ||||| ||||||| ||||| |||||||  ||||||| |||||||||    
T  21353294 aacttttgggacaaccataattttacaaagaaaaagatgtattaacacaaaaactaaagtaatag--agagaaagtaaaaacat 21353213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 22972301 - 22972233
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaat 177  Q
    |||||||| |||| |||||| | |||||||| | ||||||||| ||||| |||| ||||||||||||||    
T  22972301 agagttgtgttatttgaacatccatttatataacaacttttgagacaactaaaattttacaaagaaaat 22972233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 223
Target Start/End: Complemental strand, 5168368 - 5168253
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatag 207  Q
    ||||||||| |||| ||||||   || ||||||| ||||||||  ||||| |||| |||||||||||||||| ||| || |||||| |  || | |||||    
T  5168368 tagagttgtgttatttgaacattcatatatatgacaacttttgtgacaactaaaattttacaaagaaaatgaggtagtggcacaaaaatcaaagcaatag 5168269  T
Q  208 aaagagaaaataaaaa 223  Q
    | ||||||| ||||||    
T  5168268 agagagaaagtaaaaa 5168253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 20270718 - 20270671
Alignment:
Q  144 acttttgatacaaccaaaaatttacaaagaaaatgaagtattgacaca 191  Q
    ||||||||||||| || | ||||||||||||||||| |||||||||||    
T  20270718 acttttgatacaatcatagatttacaaagaaaatgaggtattgacaca 20270671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 18660910 - 18660829
Alignment:
Q  141 ataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaa 223  Q
    |||||||||| ||||| ||||  ||||||||| ||||||||||||| |||||| || || | |||||| ||||||| ||||||    
T  18660910 ataacttttg-tacaatcaaacttttacaaaggaaatgaagtattggcacaaaaaccaaagcaatagagagagaaagtaaaaa 18660829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 24405851 - 24405909
Alignment:
Q  118 ttatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaa 176  Q
    |||| ||||||||||||| | ||| ||||||||| ||||| | ||||||||||||||||    
T  24405851 ttatttgaacaactatttgtttgacaacttttgaaacaactataaatttacaaagaaaa 24405909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 33958190 - 33958260
Alignment:
Q  153 acaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaa 223  Q
    ||||||| |||||||||||||||| ||  |||||||||||| || || | |||||| ||||||| ||||||    
T  33958190 acaaccataaatttacaaagaaaaagagatattgacacaaaaaccaaagcaatagagagagaaagtaaaaa 33958260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 34546601 - 34546520
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgaca 189  Q
    ||||||||| |||| ||||||||| ||| ||||| || |||||  ||||| | |||| || ||||||||||| |||||||||    
T  34546601 tagagttgtgttatttgaacaactttttgtatgacaatttttgggacaactataaatgtataaagaaaatgaggtattgaca 34546520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 8687031 - 8686991
Alignment:
Q  153 acaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||| ||||| |||||||||||||||| |||||||||||||    
T  8687031 acaatcaaaattttacaaagaaaatgaggtattgacacaaa 8686991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 25560905 - 25560988
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    ||||||||||||| |||| |||||||||  |||||| |||||  ||||||| || |||| |||||||| ||  ||||||||||||    
T  25560905 agagttgtattatttgaataactatttaattgataatttttgggacaaccataattttataaagaaaa-gagatattgacacaaa 25560988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 21217696 - 21217612
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||||| | |||||||||| ||||||||| |||||||||| |||| ||||||||||| |||||||||||||    
T  21217696 agagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaaaatgaggtattgacacaaa 21217612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 37056944 - 37057028
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||||| | |||||||||| ||||||||| |||||||| | |||||||||||||||| |||||||||||||    
T  37056944 agagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaatattttacaaagaaaatgaggtattgacacaaa 37057028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 108 - 223
Target Start/End: Original strand, 55361119 - 55361234
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatag 207  Q
    ||||||||| |||| |||||||||||||  |||| ||||| ||  |||||||   ||||||||||||||||||||||||||||||| || || | |||||    
T  55361119 tagagttgttttatttgaacaactatttgaatgaaaacttatgtgacaaccattgatttacaaagaaaatgaagtattgacacaaaaaccaaagcaatag 55361218  T
Q  208 aaagagaaaataaaaa 223  Q
    | ||||||| ||||||    
T  55361219 agagagaaagtaaaaa 55361234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 193
Target Start/End: Complemental strand, 23592640 - 23592558
Alignment:
Q  111 agttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||| |||| |||||| | |||||||||| ||||||||| |||||||||| |||| ||||||||||| |||||||||||||    
T  23592640 agttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaaaatgaggtattgacacaaa 23592558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 13348021 - 13348138
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    |||||| | |||| |||||| | |||||||||| ||||||||  |||||||||| |||||||||||||||| ||||||| ||||| || || | ||||||    
T  13348021 agagttatgttatttgaacatccatttatatgacaacttttgggacaaccaaaattttacaaagaaaatgaggtattgatacaaaaaccaaagcaataga 13348120  T
Q  209 aagagaaaataaaaacat 226  Q
     ||||||  |||||||||    
T  13348121 gagagaaggtaaaaacat 13348138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 44383373 - 44383289
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||||| | |||||||||| ||||||||| |||| ||||| |||| ||||||||||| |||||||||||||    
T  44383373 agagttgtgttatttgaacatccatttatatgacaacttttgagacaatcaaaattttataaagaaaatgaggtattgacacaaa 44383289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 6178312 - 6178429
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    |||||||| |||| |||||||| |||| ||||| |||||| |||||||||| ||||||  |||||||| |  ||||||||||||| |  || | ||||||    
T  6178312 agagttgtgttatttgaacaaccatttttatgacaactttcgatacaaccataaatttgtaaagaaaaagtggtattgacacaaaaatcaaagcaataga 6178411  T
Q  209 aagagaaaataaaaacat 226  Q
     ||||||| |||||||||    
T  6178412 gagagaaagtaaaaacat 6178429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 35376968 - 35377085
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    |||||||| |||| |||||| | ||||| |||| ||||||||  |||||||||| |||||||||||||||| |||||| |||||| |  || | ||||||    
T  35376968 agagttgtgttatttgaacatccatttagatgacaacttttgtgacaaccaaaattttacaaagaaaatgatgtattggcacaaaaatcaaagcaataga 35377067  T
Q  209 aagagaaaataaaaacat 226  Q
     | ||||| |||||||||    
T  35377068 gaaagaaagtaaaaacat 35377085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 43158157 - 43158274
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    |||||||| |||| |||||||| |||| |||||||| ||||| ||||| || ||||||| ||| ||| |||| |||||||| ||| | |||  |||||||    
T  43158157 agagttgtgttatttgaacaaccatttttatgataaattttggtacaatcataaatttataaaaaaattgaaatattgacaaaaaaattaaaataataga 43158256  T
Q  209 aagagaaaataaaaacat 226  Q
     ||| |||||||||||||    
T  43158257 gagataaaataaaaacat 43158274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 109 - 226
Target Start/End: Complemental strand, 51982283 - 51982166
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    |||||||| |||| |||| | | |||||||| | || |||||| ||||| |||| |||| ||||||||| | ||||||||||||| ||||| | ||||||    
T  51982283 agagttgtgttatttgaaaatccatttatataacaatttttgagacaactaaaattttataaagaaaataaggtattgacacaaaaactaaagcaataga 51982184  T
Q  209 aagagaaaataaaaacat 226  Q
     ||||||| |||||||||    
T  51982183 gagagaaagtaaaaacat 51982166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 25641470 - 25641554
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    ||||||||||||| |||||| | |||||||||| ||||||||| |||||||||  |||||| ||||||| | |||||| ||||||    
T  25641470 agagttgtattatttgaacatccatttatatgacaacttttgagacaaccaaagttttacatagaaaataaggtattggcacaaa 25641554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 42889168 - 42889085
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    ||||||| |||| | |||| ||||||| |||| ||||||||||| |||||||| ||||||||||||||||  ||||| ||||||    
T  42889168 gagttgtgttatttaaacatctatttagatgacaacttttgatataaccaaaattttacaaagaaaatgagttattggcacaaa 42889085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 44463538 - 44463427
Alignment:
Q  112 gttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaag 211  Q
    ||||| |||| |||||| | | |||||||||||||||||| | || ||||| |||||||||||||||   |||||| ||||| |  || |||| ||||||    
T  44463538 gttgtgttatttgaacatcaaattatatgataacttttgagataatcaaaattttacaaagaaaatgtgatattgatacaaaaatcaaagtaacagaaag 44463439  T
Q  212 agaaaataaaaa 223  Q
    ||||||||||||    
T  44463438 agaaaataaaaa 44463427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 23600775 - 23600702
Alignment:
Q  111 agttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtat 184  Q
    |||||| |||| |||||| | |||||||||| ||||||||| |||||||||| |||| ||||||||||| ||||    
T  23600775 agttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaaaatgangtat 23600702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 46624091 - 46623977
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    |||||||| |||| |||||| | ||  || ||||||||||||  |||| ||||| |||||||||||||||| ||| ||||||||| || ||   ||||||    
T  46624091 agagttgtgttatttgaacatccatacatgtgataacttttgtgacaatcaaaattttacaaagaaaatgaggtagtgacacaaaaaccaaaacaataga 46623992  T
Q  209 aagagaaaataaaaa 223  Q
    |||||||| ||||||    
T  46623991 aagagaaagtaaaaa 46623977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 55151603 - 55151717
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatag 207  Q
    ||||||||| |||| ||||||  ||| ||| ||| |||||||| |||||  |||| ||||||||| |||||||||||||||||||| || || | | |||    
T  55151603 tagagttgtgttatttgaacatttatatatgtgacaacttttgttacaattaaaattttacaaaggaaatgaagtattgacacaaaaaccaaagcactag 55151702  T
Q  208 aaagagaaaataaaa 222  Q
    | ||||||| |||||    
T  55151703 agagagaaagtaaaa 55151717  T

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Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 45711360 - 45711409
Alignment:
Q  143 aacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaa 192  Q
    ||||||||  |||||||||| |||||||||||||||||||||||||||||    
T  45711360 aacttttgtaacaaccaaaattttacaaagaaaatgaagtattgacacaa 45711409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 223
Target Start/End: Complemental strand, 41309302 - 41309187
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatag 207  Q
    ||||||||| |||| |||||| | || |||  |||||||||||  |||| ||||| |||||||||||||||| ||| ||||||||| |  || | |||||    
T  41309302 tagagttgtgttatttgaacatccatatatgcgataacttttgtgacaatcaaaattttacaaagaaaatgaggtagtgacacaaaaatcaaagcaatag 41309203  T
Q  208 aaagagaaaataaaaa 223  Q
    | ||||||| ||||||    
T  41309202 agagagaaagtaaaaa 41309187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 5114262 - 5114148
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    |||||||| |||| |||||| |||||||| ||| || ||||   |||| ||||| |||||||||||||||| ||| ||||||||| |  || | ||||||    
T  5114262 agagttgtgttatttgaacatctatttatgtgacaatttttatgacaatcaaaattttacaaagaaaatgaggtagtgacacaaaaatcaaagcaataga 5114163  T
Q  209 aagagaaaataaaaa 223  Q
     ||||||| ||||||    
T  5114162 gagagaaagtaaaaa 5114148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 34627770 - 34627836
Alignment:
Q  111 agttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaat 177  Q
    |||||| |||| ||||||| ||||| ||||||||||| | | ||||||| |||||||||||||||||    
T  34627770 agttgtgttatttgaacaattatttttatgataacttataagacaaccataaatttacaaagaaaat 34627836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 37503635 - 37503748
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaa 209  Q
    ||||||| |||| ||||||  ||| ||| ||||||||||||  |||||||||| ||| ||||| ||||||  |||||||||||| |  || | |||||||    
T  37503635 gagttgtgttatttgaacatttatatatgtgataacttttgtgacaaccaaaattttgcaaaggaaatgagatattgacacaaaaatcaaagcaatagaa 37503734  T
Q  210 agagaaaataaaaa 223  Q
    | ||||| ||||||    
T  37503735 aaagaaagtaaaaa 37503748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 11630660 - 11630736
Alignment:
Q  132 atttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    |||||||||| || |||||| ||||  |||| |||||||||||||||||||||||| | ||| || || ||||||||    
T  11630660 atttatatgacaatttttgagacaattaaaattttacaaagaaaatgaagtattgatataaaaaccaaagtaataga 11630736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 49780628 - 49780728
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaa 209  Q
    ||||||| |||| |||| |||||||||  |||||| ||||   ||||||| |||||||||||||||| || |||||| |||||| || || | |||||||    
T  49780628 gagttgtgttatttgaataactatttaagtgataatttttatgacaaccataaatttacaaagaaaaggaggtattggcacaaaaaccaaagcaatagaa 49780727  T
Q  210 a 210  Q
    |    
T  49780728 a 49780728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 28539629 - 28539744
Alignment:
Q  111 agttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaa 210  Q
    |||||| |||| |||||| | ||||| |||||||||||||  | |||||||| ||| |||||||||||| || ||| ||||||    || | |||||| |    
T  28539629 agttgtgttatttgaacatccatttagatgataacttttgtgataaccaaaattttgcaaagaaaatgatgttttggcacaaaagtcaaagcaatagaga 28539728  T
Q  211 gagaaaataaaaacat 226  Q
    |||||| |||||||||    
T  28539729 gagaaagtaaaaacat 28539744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 49086996 - 49087078
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    ||||||| |||| |||| || || || ||||| |||||| || |||||||||| ||| |||||||||||| |||||||||||||    
T  49086996 gagttgtgttatttgaataattaattttatgacaacttt-gaaacaaccaaaatttttcaaagaaaatgaggtattgacacaaa 49087078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 52963257 - 52963316
Alignment:
Q  164 tttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaa 223  Q
    |||||||||||||  | ||||||||||||| ||||| |||||||||| ||||| ||||||    
T  52963257 tttacaaagaaaaatatgtattgacacaaaaactaaagtaatagaaaaagaaagtaaaaa 52963316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 50876304 - 50876366
Alignment:
Q  164 tttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaacat 226  Q
    ||||||||||||| || ||||||| ||||| |  || | ||||||||||||||||||||||||    
T  50876304 tttacaaagaaaaagaggtattgatacaaaaatcaaagcaatagaaagagaaaataaaaacat 50876366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 225
Target Start/End: Complemental strand, 9753491 - 9753407
Alignment:
Q  143 aacttttgatacaaccaaaaatttacaaa--gaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaaca 225  Q
    |||||||||||||| || | |||||||||  |||||||  ||||||||||||| || || |||||||| ||| ||| ||||||||    
T  9753491 aacttttgatacaatcatagatttacaaaaagaaaatgtggtattgacacaaaaaccaaagtaatagagagataaagtaaaaaca 9753407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 36670902 - 36671015
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaa 209  Q
    ||||||| |||| |||||| | || ||| ||||||||||||  |||||||||| ||||||||  |||||| ||| || |||||| || || | ||||||     
T  36670902 gagttgtgttatttgaacatccatatatgtgataacttttgtgacaaccaaaattttacaaatgaaatgaggtagtggcacaaaaaccaaagcaatagag 36671001  T
Q  210 agagaaaataaaaa 223  Q
    ||| ||| ||||||    
T  36671002 agaaaaagtaaaaa 36671015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 39630503 - 39630572
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaat 177  Q
    ||||||| | |||| |||||| |||||||||| |||| |||| | |||| ||||| ||||||||||||||    
T  39630503 tagagttttgttatttgaacatctatttatataataatttttaagacaatcaaaattttacaaagaaaat 39630572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 50559101 - 50559166
Alignment:
Q  111 agttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaa 176  Q
    |||||| |||| ||||||||||||||| |||||| ||||   ||||||| ||||||| ||||||||    
T  50559101 agttgtgttatttgaacaactatttatgtgataatttttatgacaaccataaatttataaagaaaa 50559166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 14226636 - 14226676
Alignment:
Q  153 acaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||| ||||| ||||||||||||||||| ||||||||||||    
T  14226636 acaatcaaaattttacaaagaaaatgaaatattgacacaaa 14226676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 33791701 - 33791741
Alignment:
Q  153 acaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||||| || ||||||||||||| |||||||||||||    
T  33791701 acaaccaaaatttcacaaagaaaatgaggtattgacacaaa 33791741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 35201323 - 35201427
Alignment:
Q  111 agttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaa 210  Q
    |||||| |||| |||||| | ||||| |||| ||||||||| ||||  |||| | |||||||||||| |  |||||||||||| || ||   ||||||||    
T  35201323 agttgtgttatttgaacatccatttaaatgacaacttttgagacaattaaaattatacaaagaaaataagatattgacacaaaaaccaaaacaatagaaa 35201422  T
Q  211 gagaa 215  Q
    |||||    
T  35201423 gagaa 35201427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 13333057 - 13333141
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||||| | |||||||||| ||||||||| |||||||||| |||| ||||||||||| |||||||||||||    
T  13333057 agagttgtgttatttgaacatcgatttatatgacaacttttgagacaaccaaaattttataaagaaaatgatgtattgacacaaa 13333141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 193
Target Start/End: Original strand, 41056636 - 41056718
Alignment:
Q  111 agttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||| |||| |||||| | |||||||||| ||||||||| |||||||||| |||| ||||||||||| |||||||||||||    
T  41056636 agttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaaaatgaggtattgacacaaa 41056718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 25270469 - 25270553
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||||| | |||||||||| |||||| || |||||||||| |||| ||||||||||| |||||||||||||    
T  25270469 agagttgtgttatttgaacatccatttatatgacaactttcgagacaaccaaaattttataaagaaaatgaggtattgacacaaa 25270553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 110 - 226
Target Start/End: Original strand, 44977387 - 44977503
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaa 209  Q
    ||||||| |||| |||||||| ||||  | || ||||| ||| ||||||| ||||||||||||||||||  ||||||||||||| || || | ||||||     
T  44977387 gagttgtgttatttgaacaaccatttgaacgaaaacttatgagacaaccataaatttacaaagaaaatggggtattgacacaaaaaccaaagcaatagag 44977486  T
Q  210 agagaaaataaaaacat 226  Q
    ||||||| |||||||||    
T  44977487 agagaaagtaaaaacat 44977503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 2076753 - 2076639
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    |||||||| |||| |||||| | ||  || ||| ||||||||  |||||||||| |||||||||||||||| ||||||||||||| |  || | ||||||    
T  2076753 agagttgtgttatttgaacatcaatagatgtgacaacttttgtgacaaccaaaattttacaaagaaaatgaggtattgacacaaaaatcaaagcaataga 2076654  T
Q  209 aagagaaaataaaaa 223  Q
    |||||||| ||||||    
T  2076653 aagagaaagtaaaaa 2076639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 3097748 - 3097832
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||||| | |||||||||| ||||||||| |||||||||| |||| |||||||||||  |||| |||||||    
T  3097748 agagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaaaatgagttatttacacaaa 3097832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 9647285 - 9647202
Alignment:
Q  140 gataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaa 223  Q
    |||||||||||  |||||||||| ||||||||| |||||||||| ||||||||| || || | |||||| ||||||| ||||||    
T  9647285 gataacttttgtgacaaccaaaattttacaaaggaaatgaagtagtgacacaaaaaccaaagcaatagagagagaaagtaaaaa 9647202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 28495042 - 28494927
Alignment:
Q  111 agttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaa 210  Q
    |||||| |||| |||||||| ||||| || | ||||||||  ||||||| ||||||||| ||||||| | ||||||||||||| || ||  ||||  | |    
T  28495042 agttgtgttatttgaacaaccatttaaattacaacttttgtgacaaccataaatttacacagaaaattaggtattgacacaaaaaccaaaataatttaga 28494943  T
Q  211 gagaaaataaaaacat 226  Q
    ||||||||||||||||    
T  28494942 gagaaaataaaaacat 28494927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 19642759 - 19642665
Alignment:
Q  132 atttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaacat 226  Q
    |||||||||| ||||||||| ||||||| || ||| |||||||||||||| ||||||||||| |  || | |||||| ||||||| | |||||||    
T  19642759 atttatatgagaacttttgagacaaccacaattttgcaaagaaaatgaagcattgacacaaaaatcaaagcaatagagagagaaagtgaaaacat 19642665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 27490616 - 27490734
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatag 207  Q
    ||||||||| |||| |||||| | ||||  |||| ||||||||  |||| ||||| |||||||||||||||| ||||| ||||||| |  || | |||||    
T  27490616 tagagttgtgttatttgaacatccattttgatgacaacttttgtgacaatcaaaattttacaaagaaaatgatgtattaacacaaaaatcaaagcaatag 27490715  T
Q  208 aaagagaaaataaaaacat 226  Q
    | ||||||| |||||||||    
T  27490716 agagagaaattaaaaacat 27490734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 43076068 - 43075983
Alignment:
Q  108 tagagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaa-tgaagtattgacacaaa 193  Q
    ||||||||| |||| |||| ||| |||||||||||||| ||||| |||||||||| |||| ||| |||| |||||||||||||||||    
T  43076068 tagagttgtgttatttgaataacaatttatatgataac-tttgagacaaccaaaattttataaaaaaaattgaagtattgacacaaa 43075983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 3412455 - 3412508
Alignment:
Q  123 tgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaa 176  Q
    ||||||||||||||| ||| ||||||||| ||||||| ||||||||||||||||    
T  3412455 tgaacaactatttatgtgacaacttttgaaacaaccataaatttacaaagaaaa 3412508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 7663997 - 7664067
Alignment:
Q  153 acaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaa 223  Q
    ||||||| |||||||||||||||| || ||||||||||||| || || | |||||| ||||||| ||||||    
T  7663997 acaaccataaatttacaaagaaaaagaggtattgacacaaaaaccaaagcaatagagagagaaagtaaaaa 7664067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 16973664 - 16973762
Alignment:
Q  125 aacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaa 223  Q
    |||| ||||||||  || |||| ||||||||||||||| |||||||| |||||||   |||||| |||| |  || ||||||| |||||||||||||||    
T  16973664 aacatctatttattggacaactattgatacaaccaaaattttacaaataaaatgagaaattgacccaaaaatcaaagtaatagtaagagaaaataaaaa 16973762  T

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Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 8848584 - 8848661
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattg 186  Q
    |||||||| |||| |||||| ||||||| ||||||| |||||  |||| ||||| ||| |||||||||||| ||||||    
T  8848584 agagttgtgttatttgaacatctatttagatgataatttttgtgacaatcaaaattttgcaaagaaaatgatgtattg 8848661  T

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Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 33273495 - 33273564
Alignment:
Q  130 ctatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaa 199  Q
    ||||||||| ||||| |||| | |||||||||| |||| |||||||||||  |||||||||||| |||||    
T  33273495 ctatttatacgataattttttaaacaaccaaaattttataaagaaaatgagatattgacacaaaaactaa 33273564  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 39147941 - 39147833
Alignment:
Q  118 ttatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaa 217  Q
    |||| |||||||| ||||  |||| ||||||||  |||| || ||||||||||| ||||||| ||||||||||||| |  ||   |||| |||||||||     
T  39147941 ttatttgaacaaccattttaatgacaacttttgggacaatcataaatttacaaaaaaaatgaggtattgacacaaaaatcaaaacaatacaaagagaaag 39147842  T
Q  218 taaaaacat 226  Q
    |||||||||    
T  39147841 taaaaacat 39147833  T

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Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 41195734 - 41195654
Alignment:
Q  143 aacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaa 223  Q
    ||||||||  |||||||||| ||||||||| ||||||  |||||||||||| || || | |||||| ||||||| ||||||    
T  41195734 aacttttgtgacaaccaaaattttacaaaggaaatgagatattgacacaaaaaccaaagcaatagagagagaaagtaaaaa 41195654  T

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Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 5054059 - 5054126
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaa 176  Q
    |||||||| |||| | || |||||||||||||| ||||||||| ||||||| ||||||| ||| ||||    
T  5054059 agagttgtgttatttaaaaaactatttatatgacaacttttgagacaaccataaatttataaaaaaaa 5054126  T

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Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 193
Target Start/End: Complemental strand, 7667286 - 7667211
Alignment:
Q  118 ttatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||| ||||||| ||||| | | |||| ||||  |||||||| ||||||||||||||||| || ||||||||||||    
T  7667286 ttatttgaacaattatttgtgtaataaattttagtacaaccataaatttacaaagaaaattaaatattgacacaaa 7667211  T

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Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 34215445 - 34215332
Alignment:
Q  111 agttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaa 210  Q
    |||||| |||| |||||||  ||||  |||||||||||||  |||||| |  ||||| ||||| ||||||||||||||||||| ||||  | ||||||||    
T  34215445 agttgtgttatttgaacaatcatttcaatgataacttttg-gacaacc-attatttataaagacaatgaagtattgacacaaaaactatagcaatagaaa 34215348  T
Q  211 gagaaaataaaaacat 226  Q
    || ||| |||||||||    
T  34215347 gaaaaagtaaaaacat 34215332  T

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Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 6511391 - 6511321
Alignment:
Q  153 acaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaataaaaa 223  Q
    |||| ||||| |||| |||| |||||| ||| ||||||||| || || | |||||||||||||||||||||    
T  6511391 acaatcaaaattttataaaggaaatgaggtagtgacacaaaaaccaaagcaatagaaagagaaaataaaaa 6511321  T

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Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 9990875 - 9990761
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaataga 208  Q
    |||||||| |||| |||||| | || ||| ||||||||||||  ||||  |||| ||||||||| |||||||||| ||  ||||| || || | ||||||    
T  9990875 agagttgtgttatttgaacatccatatatgtgataacttttgtgacaattaaaattttacaaaggaaatgaagtagtggtacaaaaaccaaagcaataga 9990776  T
Q  209 aagagaaaataaaaa 223  Q
     ||||||| ||||||    
T  9990775 gagagaaagtaaaaa 9990761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 32701273 - 32701207
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaa 176  Q
    ||||||| |||| |||||||| |||||||||||||||||||   |||||| || |||||||| ||||    
T  32701273 gagttgtgttatttgaacaaccatttatatgataacttttggggcaaccataagtttacaaaaaaaa 32701207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 9521962 - 9521925
Alignment:
Q  139 tgataacttttgatacaaccaaaaatttacaaagaaaa 176  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  9521962 tgataacttttgagacaaccataaatttacaaagaaaa 9521925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 44050199 - 44050119
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacac 190  Q
    |||| ||| |||| |||||||| |||| |  || ||||||||| ||||||| ||||||||||||||||| | ||||||||||    
T  44050199 agaggtgtgttatttgaacaaccatttgtgcgacaacttttgagacaaccataaatttacaaagaaaat-atgtattgacac 44050119  T

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Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 44654807 - 44654738
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatga 179  Q
    ||||||| |||| |||| ||  |||||||||||||||||| | ||||| |||| |||| |||||||||||    
T  44654807 gagttgtgttatttgaaaaataatttatatgataacttttaagacaactaaaattttataaagaaaatga 44654738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 14255478 - 14255374
Alignment:
Q  118 ttatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaaagagaaaa 217  Q
    |||| |||||||| ||||||  || ||||||||  ||||||| ||||||||||||||||  | ||||| ||||| | || || | |||||| |||||||     
T  14255478 ttatttgaacaaccatttatgcgacaacttttgggacaaccataaatttacaaagaaaagtaggtattaacacataaaccaatgcaatagagagagaaag 14255379  T
Q  218 taaaa 222  Q
    |||||    
T  14255378 taaaa 14255374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 226
Target Start/End: Complemental strand, 31415093 - 31414977
Alignment:
Q  110 gagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaacactaaggtaatagaa 209  Q
    |||||||||||| |||||||  ||||   ||||||||||||| ||||||| || |||| |||||||  ||  |||||||||||| || || | || |||     
T  31415093 gagttgtattatttgaacaatcattttattgataacttttgagacaaccataattttaaaaagaaagagagatattgacacaaaaaccaatgcaacagag 31414994  T
Q  210 agagaaaataaaaacat 226  Q
    |||| || |||||||||    
T  31414993 agagtaagtaaaaacat 31414977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 33725572 - 33725664
Alignment:
Q  132 atttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgac-acaaacactaaggtaatagaaagagaaaataaaaa 223  Q
    ||||||||||||||||||    |||||| ||||| | |||||||||||  ||||||| | ||| |||||  ||||| ||||||||||||||||    
T  33725572 atttatatgataacttttaggtcaaccataaattcataaagaaaatgacatattgacaaaaaaaactaaaataataaaaagagaaaataaaaa 33725664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 37737858 - 37737942
Alignment:
Q  109 agagttgtattatatgaacaactatttatatgataacttttgatacaaccaaaaatttacaaagaaaatgaagtattgacacaaa 193  Q
    |||||||| |||| |||||  | || ||| ||| ||||||||  |||||||||| ||||||||| ||||||  ||||||||||||    
T  37737858 agagttgtgttatttgaacgtccatatatgtgacaacttttgtgacaaccaaaactttacaaaggaaatgagatattgacacaaa 37737942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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