View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8349_low_9 (Length: 554)
Name: NF8349_low_9
Description: NF8349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8349_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 13 - 537
Target Start/End: Original strand, 50549029 - 50549543
Alignment:
| Q |
13 |
tccccaaagattatctctgttggtaattcgaggactagcataaactcctgtnnnnnnnnc-acatcttgttatcactctttaaagaaacagtcacagctt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
50549029 |
tccccaaagattatctctgttggtaattcgaggactagcataaactcctgtaaaaaaaaccacatcttgttatcactctttaaagaaacagtcacagctt |
50549128 |
T |
|
| Q |
112 |
ggaagtaagtgtccacaatatcaatgacatagttacaattaattgattttaggatccatatacctccagcatgcctcgttgcctcagagatggcacagag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
50549129 |
ggaagtaagtgtccacaatatcaatgacatagttacaattaattgattttaggatccatatacctccagcatgcctcgttgcctcaga-----------g |
50549217 |
T |
|
| Q |
212 |
atggcacatttcacataccccaagccttgccataaattagcaactctagcaaattggcagtgggtttccataagaactattaacatcgggttataacgac |
311 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50549218 |
atggcacatttcacataccccaagccttgccagaaattagcaactctagcaaattggcagtgggtttccataagaactattaacatcgggttataacgac |
50549317 |
T |
|
| Q |
312 |
gaataaggacatgagcttgtcgtttcccttcagaactaactgcacctctaatattccaactaaggatacttaaatcattgaaggcattcatcataaaaca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50549318 |
gaataaggacatgagcttgtcgtttcccttcagaactaactgcacctctaatattccaactaaggatacttaaatcattgaaagcattcatcataaaaca |
50549417 |
T |
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| Q |
412 |
aatttagatttagagggcagtaaacctggaagctacgttgtttccatagacccattatccttgtatggggatgtatgcttttcctcaccaagtatcatag |
511 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
50549418 |
aattaagatttagagggcagtaaacctggaagctacgttgtttccatagacccgttatccttgtatgggggtgtatgcttttcctcaccaagtatcatag |
50549517 |
T |
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| Q |
512 |
cacaaggaatttcatggtttataata |
537 |
Q |
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||||||||||||||||||||| |||| |
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| T |
50549518 |
cacaaggaatttcatggtttagaata |
50549543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 8e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 129 - 343
Target Start/End: Complemental strand, 19759588 - 19759385
Alignment:
| Q |
129 |
atatcaatgacatagttacaattaattgattttaggatccatatacctccagcatgcctcgttgcctcagagatggcacagagatggcacatttcacata |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||| |
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| T |
19759588 |
atatcaatgacatagttacaattaattgattttaggatccatatacctccagcatgccccgttgccttagagatggcaca-----------tttcacata |
19759500 |
T |
|
| Q |
229 |
ccccaagccttgccataaattagcaactctagcaaattggcagtgggtttccataagaactattaacatcgggttataacgacgaataaggacatgagct |
328 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
19759499 |
ccccaagccttgccagaaattagcaactctagcaaattggcaatgggtttccataagaactatcaacatcgggttataacgacgaataaggacacgagct |
19759400 |
T |
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| Q |
329 |
tgtcgtttcccttca |
343 |
Q |
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||||||||||||||| |
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| T |
19759399 |
tgtcgtttcccttca |
19759385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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