View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8350_high_1 (Length: 899)
Name: NF8350_high_1
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8350_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 693; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 13 - 786
Target Start/End: Original strand, 42030035 - 42030808
Alignment:
| Q |
13 |
gataatactgctaccttaaagtgtcttgtgagattggttgttgcaattttgttactgaacctgattctgtatttcttgattgatttcagcttgtgttctc |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42030035 |
gataatactgctaccttaaagtgtcttgtgagattggttgttgcaattttgttactgaacctgattctgtatttcttgattgatttcagcttgtgttctc |
42030134 |
T |
|
| Q |
113 |
ctcttcagccactgtatatggttggccaaaggaggtcccctgcactgaagagtttcctttatcagctgcaagcccatatggacgaaccaaggtatggcta |
212 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
42030135 |
ctcttcagccactgtatacggttggccaaaggaggtcccctgcactgaagagtttcctttatcggctgcaagcccatatggacgaaccaaggtatgacta |
42030234 |
T |
|
| Q |
213 |
aagaactatttagggtgcttatcggatactttggtagggatagctaaacaagagttccctttgcaatcttgtttatattttggttgtatattacagatta |
312 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42030235 |
aagaactatttagggtacttatcggatactttggtagggatagctaaacaagagttccctttgcaatcttgtttatattttggttgtatattacagatta |
42030334 |
T |
|
| Q |
313 |
cagatgtatcctatcagaatctaatgagagnnnnnnnnnnnnnnnnnnnagctatacattgaagaaatttgtcgtgatatctaccgttctgatccaggat |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42030335 |
cagatgtatcctatcagaatctaatgagagttctttttctttttctttcagctatacattgaagaaatttgtcgtgatatctaccgttctgatccaggat |
42030434 |
T |
|
| Q |
413 |
ggaaaataacactgttgagatacttcaaccccgttggtgcacatcctagtggtcatattggtgaggatcctcgcggaattcccaacaacctcatgccttt |
512 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42030435 |
ggaaaataacactgttgagatacttcaaccccgttggtgcacatcccagtggtcatattggtgaggatcctcgcggaattcccaacaacctcatgccttt |
42030534 |
T |
|
| Q |
513 |
tgttcagcaagttgcagttggcagacgctctgcattgacagtttttggaacagattatagcacaagtgatggaactggagtatgttttctttgttcttga |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42030535 |
tgttcagcaagttgcagttggcagacgctctgcattgacagtttttggaacagattatagcacaagtgatggaactggagtatgttttctttgttcttga |
42030634 |
T |
|
| Q |
613 |
cttgttttactgaaattttgacttggaaagttgcatgctaagctcacacactatccactatttcccttcgatttggattattttgataataatgatgcca |
712 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42030635 |
cttgttttgctgaaattttgacttggaaagttgcatgctaagctcacacactatccactatttcccttcgatttggattattttgataataatgatgcca |
42030734 |
T |
|
| Q |
713 |
cagttggtccattcttacatgcgtaattcccatttgttaagatctacctttgatttcttttgaggatcttacat |
786 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42030735 |
cagttggtccattcttacatgcgtaattcccatttgttaagatctacctttgatttcttttgaggatcttacat |
42030808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 679 - 881
Target Start/End: Complemental strand, 41807898 - 41807707
Alignment:
| Q |
679 |
ttcgatttggattattttgataataatgatgccacagttggtccattcttacatgcgtaattcccatttgttaagatctacctttgatttcttttgagga |
778 |
Q |
| |
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||||||||| ||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
41807898 |
ttcgatttgcattattttgataataatgatgtcatagttggtccattcttac------------catttgttaagatctacctttgatttcttttgagga |
41807811 |
T |
|
| Q |
779 |
tcttacatgataaatctt-gtctttttctcaggtccgtgattacattcatgttgttgatttagctgatgggcacattgctgcattgtgtaagctagatga |
877 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41807810 |
tcttacatgataaatctttgtctttttctcaggtccgtgattacattcatgttgttgatttagctgatgggcacattgctgcattgtgtaagctagatga |
41807711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 769 - 881
Target Start/End: Original strand, 42030825 - 42030938
Alignment:
| Q |
769 |
cttttgaggatcttacatgataaatctt-gtctttttctcaggtccgtgattacattcatgttgttgatttagctgatgggcacattgctgcattgtgta |
867 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42030825 |
cttttgaggatcttacatgataaatctttgtctttttctcaggtccgtgattacattcatgttgttgatttagctgatgggcacattgctgcattgtgta |
42030924 |
T |
|
| Q |
868 |
agctagatgatcct |
881 |
Q |
| |
|
|||||||||||||| |
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|
| T |
42030925 |
agctagatgatcct |
42030938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 5e-40; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 2132272 - 2132152
Alignment:
| Q |
88 |
ttgattgatttcagcttgtgttctcctcttcagccactgtatatggttggccaaaggaggtcccctgcactgaagagtttcctttatcagctgcaagccc |
187 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||||||||| | ||||| |||| ||| |
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|
| T |
2132272 |
ttgaatgatttcagcttgtgttctcatcttcagccactgtatatggttggccaaaggaggttccatgtactgaagagtttcctctgtcagcagcaaaccc |
2132173 |
T |
|
| Q |
188 |
atatggacgaaccaaggtatg |
208 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
2132172 |
atatggacgaaccaaggtatg |
2132152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 369 - 598
Target Start/End: Complemental strand, 2131904 - 2131675
Alignment:
| Q |
369 |
cattgaagaaatttgtcgtgatatctaccgttctgatccaggatggaaaataacactgttgagatacttcaaccccgttggtgcacatcctagtggtcat |
468 |
Q |
| |
|
|||||||||||| ||||||||| || | ||| ||||||||| |||||||||| | ||||||||||||||||| || |||||||| ||||||||| || |
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|
| T |
2131904 |
cattgaagaaatctgtcgtgatgtcaatcgtgctgatccagattggaaaataatgttattgagatacttcaacccagtgggtgcacaccctagtggttat |
2131805 |
T |
|
| Q |
469 |
attggtgaggatcctcgcggaattcccaacaacctcatgccttttgttcagcaagttgcagttggcagacgctctgcattgacagtttttggaacagatt |
568 |
Q |
| |
|
||||| |||||||||| ||| ||||| || || || ||||| ||| |||||||||| || ||||||||||| ||||| ||||||||||||||| |||| |
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|
| T |
2131804 |
attggggaggatcctcacgggattccaaataatcttatgccatttattcagcaagtagcggttggcagacgtcctgcactgacagtttttggaaatgatt |
2131705 |
T |
|
| Q |
569 |
atagcacaagtgatggaactggagtatgtt |
598 |
Q |
| |
|
||| ||| |||||| ||||| ||||||| |
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|
| T |
2131704 |
ataaaacagttgatggtactggggtatgtt |
2131675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 370 - 598
Target Start/End: Complemental strand, 2127444 - 2127216
Alignment:
| Q |
370 |
attgaagaaatttgtcgtgatatctaccgttctgatccaggatggaaaataacactgttgagatacttcaaccccgttggtgcacatcctagtggtcata |
469 |
Q |
| |
|
||||||||||||||||||||| | | ||| |||| |||| |||||||||| | | | |||||| || ||||| || |||||||| ||||||||| ||| |
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|
| T |
2127444 |
attgaagaaatttgtcgtgatgttcatcgtgctgagccagactggaaaataatattatcgagatattttaacccagtgggtgcacaccctagtggttata |
2127345 |
T |
|
| Q |
470 |
ttggtgaggatcctcgcggaattcccaacaacctcatgccttttgttcagcaagttgcagttggcagacgctctgcattgacagtttttggaacagatta |
569 |
Q |
| |
|
|||| ||||||||||| ||| |||| ||||| |||||||| || |||||||||| || ||||||||||| ||||| ||||| ||||||||| ||||| |
|
|
| T |
2127344 |
ttggagaggatcctcgtggagttccaaacaatctcatgccattcattcagcaagtagcggttggcagacggcctgcactgacaatttttggaaatgatta |
2127245 |
T |
|
| Q |
570 |
tagcacaagtgatggaactggagtatgtt |
598 |
Q |
| |
|
|| ||| |||||| ||||| ||||||| |
|
|
| T |
2127244 |
taatacagttgatggtactggggtatgtt |
2127216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 98 - 208
Target Start/End: Complemental strand, 2127691 - 2127581
Alignment:
| Q |
98 |
tcagcttgtgttctcctcttcagccactgtatatggttggccaaaggaggtcccctgcactgaagagtttcctttatcagctgcaagcccatatggacga |
197 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||||||| || || || |||||||||||| | ||||| |||| |||||| ||||| |
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|
| T |
2127691 |
tcagcttgtgttctcatcttcggccactgtatatggttggccaaaggaggttccatgtacagaagagtttcctctgtcagcagcaaacccatacggacgt |
2127592 |
T |
|
| Q |
198 |
accaaggtatg |
208 |
Q |
| |
|
||||||||||| |
|
|
| T |
2127591 |
accaaggtatg |
2127581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 803 - 874
Target Start/End: Complemental strand, 2131469 - 2131398
Alignment:
| Q |
803 |
ttctcaggtccgtgattacattcatgttgttgatttagctgatgggcacattgctgcattgtgtaagctaga |
874 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||| |||| ||||| |
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|
| T |
2131469 |
ttctcaggttcgggattacattcatgttgttgatttagctgatggccatattgctgcattgcgtaaactaga |
2131398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 803 - 863
Target Start/End: Complemental strand, 2126906 - 2126846
Alignment:
| Q |
803 |
ttctcaggtccgtgattacattcatgttgttgatttagctgatgggcacattgctgcattg |
863 |
Q |
| |
|
|||| |||| || |||| ||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
2126906 |
ttcttaggttcgggatttcattcatgttgttgatttagcagatgggcacattgctgcattg |
2126846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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