View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8350_high_12 (Length: 340)
Name: NF8350_high_12
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8350_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 26879362 - 26879060
Alignment:
| Q |
17 |
agttctttctaattctcacctgaagatgcgtgtttgggagcgtggagcaggttagaacatcaatttttcaggctgtgtctgattggtattgttagcgtgg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26879362 |
agttctttctaattctcacctgaagatgcgtgtttgggagcatggagcaggttagaacatcaatttttcgggctgtgtctgattggtattgttagcgtgg |
26879263 |
T |
|
| Q |
117 |
ttagggaaagtattaaggtgtcgcagaactattgtattatggatctttgcccctttgaaatactgtctctaaactagagagcaactttactcggctccac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26879262 |
ttagggaaagtattaaggtgtcgcagaactattgtattatggatctttgcccctttgaaatactgtctctaaactagagagcaactttactcggctccac |
26879163 |
T |
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| Q |
217 |
atttctt-aaaaccacacatgttttcggaagtgcacttctaggtggat-nnnnnnnccatgnnnnnnnngtctggaaggacatatgtagacgacataaaa |
314 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
26879162 |
atttcttaaaaaccacacgtgttttcggaagtgcacttctaggcggataaaaaaaaccatgttttttttgtctggaaggacatatgtagacgacataaaa |
26879063 |
T |
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| Q |
315 |
act |
317 |
Q |
| |
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||| |
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| T |
26879062 |
act |
26879060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 40248844 - 40248742
Alignment:
| Q |
17 |
agttctttctaattctcacctgaagatgcgtgtttgggagcgtggagcaggttagaacatcaatttttcaggctgtgtctgattggtattgttagcgtgg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| | ||| ||| |||||| |||||||||||||||| |||| |
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| T |
40248844 |
agttctttctaattctcacctgaagatgcgtgtttgggagcgtggtgcaggttagagcatctaatttccagactgtgtttgattggtattgttagtgtgg |
40248745 |
T |
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| Q |
117 |
tta |
119 |
Q |
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||| |
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| T |
40248744 |
tta |
40248742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 40247225 - 40247185
Alignment:
| Q |
139 |
gcagaactattgtattatggatctttgcccctttgaaatac |
179 |
Q |
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||||||||| |||||||||| |||||||||||||||||||| |
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| T |
40247225 |
gcagaactagtgtattatggctctttgcccctttgaaatac |
40247185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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