View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8350_high_13 (Length: 318)
Name: NF8350_high_13
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8350_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 4072575 - 4072270
Alignment:
| Q |
1 |
ggttaacatgctattatggttatccactatgcaaccgttgaagagaggcatgtaatttgttatgagagtttaagtgatatgtcctcgcttcattggtgtg |
100 |
Q |
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| T |
4072575 |
ggttaacatgctattatggttatccactatgcaaccgttgaagagaggcatgcaatttgttatgagagtttaagtgatatgtcctcgcttcattggtgta |
4072476 |
T |
|
| Q |
101 |
tcataggagattttaatgatcgaccctatcaagaagatnnnnnnnnnnnnnt----ggtgttcatcctcatcctaattggttgtttataaggtttcgaca |
196 |
Q |
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| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| || | |
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| T |
4072475 |
ttataggagattttaatgatcgaccctatcaagaagataaaaaaaaaaaaaaaaaaggtgttcatcctcatcctaattggttgtttatagggttttgaaa |
4072376 |
T |
|
| Q |
197 |
acatggtttagacaataatagaaggtgccacaagttgaatgagaagcatgcaaagttgttgatacaagaggagtcttttaagaaggcaatgagaaaaggt |
296 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4072375 |
acatagtttagacaataatagaaggtgccacaagttgaatgagaagcatgcagagttgttgatacaagaggagtcttttaagaaggcaatgagaaaaagt |
4072276 |
T |
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| Q |
297 |
acattg |
302 |
Q |
| |
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|||||| |
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| T |
4072275 |
acattg |
4072270 |
T |
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