View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8350_high_15 (Length: 307)
Name: NF8350_high_15
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8350_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 6e-71; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 38822879 - 38823030
Alignment:
| Q |
1 |
gactttaattggggtagtaaatcccttagcatagaacttcttaaacttgctactgttaatgtttactcttactacaagattgggagtacattgctttgaa |
100 |
Q |
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| T |
38822879 |
gactttaattggggtagtaaatcccttagcatataacttcttaaacttgctactgttaatgtttactcttactacaagattgggagtacattgcttggaa |
38822978 |
T |
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| Q |
101 |
ggtatgcattaatcccacctcaactgccattcgaaaagaaaatcaaacctga |
152 |
Q |
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| T |
38822979 |
ggtatgcattaatcccaccacaaccgccattcgaaaagaaaatcaaacctga |
38823030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 158 - 287
Target Start/End: Original strand, 38823074 - 38823201
Alignment:
| Q |
158 |
ttatattataatgagctaaggaagacttgccttaatgtgcctaagtttattaaatttttctaaaatagatattttaatgttattattgtgcttttgtcgc |
257 |
Q |
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| T |
38823074 |
ttatattataatgagctaaggaagacttgctttaatgtgcctaagtttattaaatttttctaaaatagatattttaatgttattattgtaattttgtcgc |
38823173 |
T |
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| Q |
258 |
ttgagtttttactcgttattagacttgaat |
287 |
Q |
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| T |
38823174 |
ttgag--tttactcgttattagacttgaat |
38823201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 38831402 - 38831456
Alignment:
| Q |
42 |
taaacttgctactgttaatgtttactcttactacaagattgggagtacattgctt |
96 |
Q |
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| T |
38831402 |
taaacttgctactattaatgtttactcttactacatgatcgggagcacattgctt |
38831456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 38814373 - 38814426
Alignment:
| Q |
43 |
aaacttgctactgttaatgtttactcttactacaagattgggagtacattgctt |
96 |
Q |
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| T |
38814373 |
aaacttgctactgttaatgtttattcttattacaagattgggagcaaattgctt |
38814426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 38818761 - 38818812
Alignment:
| Q |
25 |
cttagcatagaacttcttaaacttgctactgttaatgtttactcttactaca |
76 |
Q |
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| T |
38818761 |
cttagcaaagaacttgctaaacttgctactgttaatgtttactcttattaca |
38818812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 17198153 - 17198081
Alignment:
| Q |
33 |
agaacttcttaaacttgctactgttaatgtttactcttactacaagattgggagtacattgctttgaaggtat |
105 |
Q |
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| T |
17198153 |
agaacttgctaaacttgctactgttaatgtttactcttatcataagattgggagtaaattgcttggaaggtat |
17198081 |
T |
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