View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8350_high_17 (Length: 294)
Name: NF8350_high_17
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8350_high_17 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 294
Target Start/End: Original strand, 38822596 - 38822878
Alignment:
| Q |
15 |
tattattctgctaagtggtaattattttcatagatttttacctcttccattgatgcataattttctctctatgccagattatacctttgtaggcgttggt |
114 |
Q |
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| T |
38822596 |
tattattctgctaattggtaattgttttcatagatttttacctcttccattgatgcataattttctctctatgccagattatacctttgtaggcgttggt |
38822695 |
T |
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| Q |
115 |
atcaaagataaattggttaagttagagaagcagtgtgggattggatac---ataaatgcatttgaacttggaccacttgctgctactgttatggatatgc |
211 |
Q |
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| T |
38822696 |
atcaaagataaattggttaagttagagaagcagtgtgggattggatacataataaatgcatttgaacttggaccacttgctgctactgttatggatatgc |
38822795 |
T |
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| Q |
212 |
ctcgcttgagtttttgtggtcttgatgaattagcttttgttgtgaatgggattgatttaagggagcagagacctttaagcctg |
294 |
Q |
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| T |
38822796 |
ctcgcttgagtttttgtggtcttgatgaattagcttttgttgtgaatgggattgatttaagggagcacagacctctgagcctg |
38822878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 38814142 - 38814293
Alignment:
| Q |
100 |
tttgtaggcgttggtatcaaagataaattggttaagttagagaagcagtgtgggattggatacataaatgcatttgaacttggaccacttgctgctactg |
199 |
Q |
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| T |
38814142 |
tttgttggagttggaatcaaagagaatttggctaagttggagaagcagtatggatttggatgtagaaatgctgttgaacttggaccctttgctgcaagtg |
38814241 |
T |
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| Q |
200 |
ttatggatatgcctcgcttgagtttttgtggtcttgatgaattagcttttgt |
251 |
Q |
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| T |
38814242 |
ttatgaagaggcctcatttgagtttttgtggtgttgatgaattagcttttgt |
38814293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 196
Target Start/End: Original strand, 38831149 - 38831259
Alignment:
| Q |
86 |
tgccagattatacctttgtaggcgttggtatcaaagataaattggttaagttagagaagcagtgtgggattggatacataaatgcatttgaacttggacc |
185 |
Q |
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| T |
38831149 |
tgccagattatacctttgtcagtgttggtattaaagatgatttggctaagcttaagaaggaatatgggattagatgcagaaatgctgtggaacttggacc |
38831248 |
T |
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| Q |
186 |
acttgctgcta |
196 |
Q |
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| T |
38831249 |
tcttgctgcta |
38831259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 240
Target Start/End: Original strand, 38820756 - 38820908
Alignment:
| Q |
88 |
ccagattatacctttgtaggcgttggtatcaaagataaattggttaagttagagaagcagtgtgggattggatacataaatgcatttgaacttggaccac |
187 |
Q |
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| T |
38820756 |
ccagattatacctttgttggtgttggtatcaatcataatttggctaaacttgagaaggaatatggggttagatgcagaaatgctgtggaacttggaccct |
38820855 |
T |
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| Q |
188 |
ttgctgctactgttatggatatgcctcgcttgagtttttgtggtcttgatgaa |
240 |
Q |
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| T |
38820856 |
tggctgctagtgttaggaagatgcctagtttgagtttttgcggcgttgatgaa |
38820908 |
T |
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