View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8350_high_25 (Length: 232)
Name: NF8350_high_25
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8350_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 20277070 - 20276870
Alignment:
| Q |
23 |
tcgacaacctaacagcctctcagttaggatatatacaacactgatacaaacatttgaagtaacattcacagataaaagagaaacacacgctatggaaatg |
122 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
20277070 |
tcgacaacctaacagcctgtcagttaggatatatatcacactgatgcaaacatttgaagtaacattcacagataaaagagaaacaaacgttatggaaatg |
20276971 |
T |
|
| Q |
123 |
taacggcagaaacaacagtactggaagagagaacaaaatatcgatgatactaacgaaaagaaataagaagactacacgaatatccaaatctctgctactc |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||| |||||||||| |
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| T |
20276970 |
taacggcagaaacaacagtactggaagagagaacaaaatatcgatgatactaacgaaaaaaaataagaagactataggaatatccaaatgtctgctactc |
20276871 |
T |
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| Q |
223 |
c |
223 |
Q |
| |
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| |
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|
| T |
20276870 |
c |
20276870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 21063697 - 21063497
Alignment:
| Q |
23 |
tcgacaacctaacagcctctcagttaggatatatacaacactgatacaaacatttgaagtaacattcacagataaaagagaaacacacgctatggaaatg |
122 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
21063697 |
tcgacaacctaacagcctgtcagttaggatatatatcacactgatgcaaacatttgaagtaacattcacagataaaagagaaacaaacgttatggaaatg |
21063598 |
T |
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| Q |
123 |
taacggcagaaacaacagtactggaagagagaacaaaatatcgatgatactaacgaaaagaaataagaagactacacgaatatccaaatctctgctactc |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||| |||||||||| |
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|
| T |
21063597 |
taacggcagaaacaacagtactggaagagagaacaaaatatcgatgatactaacgaaaaaaaataagaagactataggaatatccaaatgtctgctactc |
21063498 |
T |
|
| Q |
223 |
c |
223 |
Q |
| |
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| |
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|
| T |
21063497 |
c |
21063497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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