View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8350_high_5 (Length: 484)
Name: NF8350_high_5
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8350_high_5 |
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| [»] scaffold0402 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Original strand, 2800 - 3270
Alignment:
| Q |
18 |
atcatcactctctcttacgtaaatgattttaatttttcttttcaatagaagttataattcacagcttttatgttcagctgttgtacgatcctttcatcct |
117 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800 |
atcatcactctctcttacgtaaa-gattttaaattttcttttcaatagaagttatacttcacagcttttatgttcagctgttgtacgatcctttcatcct |
2898 |
T |
|
| Q |
118 |
tggtagttagctctagattgtctcatattttggatgattt-------------atatcaatcattttctactgcataatcctgctaacaaatgttttgaa |
204 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||| ||||||||||||||| |
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| T |
2899 |
tggtagttagctctagattgtctcatattttggatgatttgtattagccttctatatcaatcattttccacagcataatcctgccaacaaatgttttgaa |
2998 |
T |
|
| Q |
205 |
atcccgattttattgttatttccatatttctcggacatataattttcctctgattccccaaagggagcaatatgtcatttaatttgatgactcttt-gga |
303 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2999 |
atcccgattttattgttatttctatatttctcggacatataattttcctatgattccccaaagggagcaatatgtcatttaatttgatgactcttttgga |
3098 |
T |
|
| Q |
304 |
ctgctctttgatttttcttttaactgcttctcttatgtaatggtttaaattgaaatttgttgagttaaataatagtaactttctacaatttcttatcctc |
403 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3099 |
ctgctctttgatttttcttttaactggttctcttatgtaatggtttcaattgaaatttgttgagttaaataatagtaactttctacaatttcttatcctc |
3198 |
T |
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| Q |
404 |
attttctttagtcatcattttccagcggaattgcaaggcaattggaaggaaaaccttctatcgtagtataat |
475 |
Q |
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| T |
3199 |
attttctttagtcatcattttccagcggaattgcaaggcaagtggaaggaaaaccttctatcttagtataat |
3270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 94 - 420
Target Start/End: Original strand, 19335775 - 19336115
Alignment:
| Q |
94 |
gctgttgtacgatcctttcatccttggtagttagctctagattgtctcatattttggatgattt-------------atatcaatcattttctactgcat |
180 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
19335775 |
gctgttgtacgatcctttcatccttggtagttagctctagattgtctcatattttggatgatttgtattagccttctatatcaatcattttccactgcat |
19335874 |
T |
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| Q |
181 |
aatcctgctaacaaatgttttgaaatcccgattttattgttatttccatatttctcggacatataattttcctctgattccccaaagggagcaatatgtc |
280 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19335875 |
aatcctgccaacaaatgttttgaaatcccgattttattgttatttctatatttctcggacatataattttcctctgattccccaaagggagcaatatgtc |
19335974 |
T |
|
| Q |
281 |
atttaatttgatgactc-tttggactgctctttgatttttcttttaactgcttctcttatgtaatggtttaaattgaaatttgttgagttaaataatagt |
379 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19335975 |
atttaatttgatgactcttttggactgctctttgatttttcttttaactggttctcttatgtaatggtttaaattgaattttgttgagttaaataatagt |
19336074 |
T |
|
| Q |
380 |
aactttctacaatttcttatcctcattttctttagtcatca |
420 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
19336075 |
aactttctacaatttcttatcctcattttctttagtcatca |
19336115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 93 - 420
Target Start/End: Original strand, 14933 - 15274
Alignment:
| Q |
93 |
agctgttgtacgatcctttcatccttggtagttagctctagattgtctcatattttggatgattt-------------atatcaatcattttctactgca |
179 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||| |
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| T |
14933 |
agctgttgtacgatcctttcatccttggtagttagctctagattgtctcatattttggatgatttgtattagccttctatatcaatcattttccacagca |
15032 |
T |
|
| Q |
180 |
taatcctgctaacaaatgttttgaaatcccgattttattgttatttccatatttctcggacatataattttcctctgattccccaaagggagcaatatgt |
279 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15033 |
aaatcctgccaacaaatgttttgaaatcccgattttattgttatttctatatttctcggacatataattttcctatgattccccaaagggagcaatatgt |
15132 |
T |
|
| Q |
280 |
catttaatttgatgactc-tttggactgctctttgatttttcttttaactgcttctcttatgtaatggtttaaattgaaatttgttgagttaaataatag |
378 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15133 |
catttaatttgatgactcttttggactgctctttgatttttcttttaactggttctcttatgtaatggtttaaattgaaatttgttgagttaaataatag |
15232 |
T |
|
| Q |
379 |
taactttctacaatttcttatcctcattttctttagtcatca |
420 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
15233 |
taactttctacaatttcttatcctcattttctttagtcatca |
15274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 93 - 420
Target Start/End: Complemental strand, 17939010 - 17938669
Alignment:
| Q |
93 |
agctgttgtacgatcctttcatccttggtagttagctctagattgtctcatattttggatgattt-------------atatcaatcattttctactgca |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||| |
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| T |
17939010 |
agctgttgtacgatcctttcatccttggtagttagctctagattgtctcatattttggatgatttgtattagccttctatatcaatcattttccacagca |
17938911 |
T |
|
| Q |
180 |
taatcctgctaacaaatgttttgaaatcccgattttattgttatttccatatttctcggacatataattttcctctgattccccaaagggagcaatatgt |
279 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17938910 |
aaatcctgccaacaaatgttttgaaatcccgattttattgttatttctatatttctcggacatataattttcctatgattccccaaagggagcaatatgt |
17938811 |
T |
|
| Q |
280 |
catttaatttgatgactc-tttggactgctctttgatttttcttttaactgcttctcttatgtaatggtttaaattgaaatttgttgagttaaataatag |
378 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17938810 |
catttaatttgatgactcttttggactgctctttgatttttcttttaactggttctcttatgtaatggtttaaattgaaatttgttgagttaaataatag |
17938711 |
T |
|
| Q |
379 |
taactttctacaatttcttatcctcattttctttagtcatca |
420 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17938710 |
taactttctacaatttcttatcctcattttctttagtcatca |
17938669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 22487726 - 22487689
Alignment:
| Q |
36 |
gtaaatgattttaatttttcttttcaatagaagttata |
73 |
Q |
| |
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|||||||||||||| |||| |||||||||||||||||| |
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| T |
22487726 |
gtaaatgattttaaattttattttcaatagaagttata |
22487689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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