View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8350_high_6 (Length: 425)
Name: NF8350_high_6
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8350_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 20370859 - 20370449
Alignment:
| Q |
1 |
atgccacatgtctcaaagccttttatcaactcccacatactgcaactgttttggaatattagtgaaatagaggcagccgtcgttggtaaaagattaccgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20370859 |
atgccacatgtctcaaagccttttatcaactcc-acatacaacaactgttttggaatattagtgaaatagaggcagccgtcgttggtaaaagattaccgc |
20370761 |
T |
|
| Q |
101 |
gagtaacataattatgtcgccagtggggtaatgttaattgtctccttacgcgtggaaaaccacattaaaaagcacaaccatgatcaaaatgcaggggcgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20370760 |
gagtaacataattatgtcgccagtggggtaatgttaattgtttccttacgcgtgaaaaaccacattaaaaagcacaaccatgatcaaaatgcaggggcgc |
20370661 |
T |
|
| Q |
201 |
tgaaccttgtttctgcttcagacgtcatcgcgatggctctcagatcgactccatgattgcgataatgaaacccctgtgaatgaaagcaatcaaaacctat |
300 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20370660 |
tgaaccttgtttccgcttcaaacgtcatcgcgatggctctcagaccgaccccatgattgcgataatgaaacccctgtgaatgaaagcaatcaaaacctat |
20370561 |
T |
|
| Q |
301 |
acctccttgccaataattaatttcattttcgtaatcctcaagattccatctttcacaaatatatatcaattcaaaataacnnnnnnntcggatacaagta |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20370560 |
acctccttgccaataattaatttcatttttgtaatcctcaagattccatctttcacaaatatatatcaattcaaaataacaaaaaaatcggatacaagta |
20370461 |
T |
|
| Q |
401 |
ttcagaataatc |
412 |
Q |
| |
|
||||| |||||| |
|
|
| T |
20370460 |
ttcaggataatc |
20370449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 314 - 411
Target Start/End: Complemental strand, 20390443 - 20390346
Alignment:
| Q |
314 |
taattaatttcattttcgtaatcctcaagattccatctttcacaaatatatatcaattcaaaataacnnnnnnntcggatacaagtattcagaataat |
411 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||| |||||| |
|
|
| T |
20390443 |
taattaatttcattttcgtaatcctttagattccatctttcactaatatatatcaattcaaaataacaagaaaatcggatacaactattcacaataat |
20390346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 366
Target Start/End: Complemental strand, 20377962 - 20377911
Alignment:
| Q |
315 |
aattaatttcattttcgtaatcctcaagattccatctttcacaaatatatat |
366 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
20377962 |
aattaatttcattttggtaatcatcaagattccatctttcactaatatatat |
20377911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University