View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8350_low_1 (Length: 919)
Name: NF8350_low_1
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8350_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 757; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 757; E-Value: 0
Query Start/End: Original strand, 11 - 894
Target Start/End: Complemental strand, 27923329 - 27922446
Alignment:
| Q |
11 |
tagataatacttagcttacaagagttttgaggcattcaaatgtaatttcaaatttggagagttccagtgcccattttgtcattttctaggcaaaatctgg |
110 |
Q |
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| T |
27923329 |
tagataatacttagcttacaagagttttgaggcattcaaatgtaatttcgaatttggagagttccagtgcccattttgtcatttgctaggcaaaatctgg |
27923230 |
T |
|
| Q |
111 |
tatgaataacatgtgtttaatgggttggttaatccacaccacagtagggtaggccatgaagtctcgacaaagctttctcgtaggtgtcatcagggctaag |
210 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
27923229 |
tatgaacaacatgtgtttaatgggttggttaatccacaccacagtagggtaggccatgaagtctcgacaaagctttcttgtaggtatcatcagggctaag |
27923130 |
T |
|
| Q |
211 |
gcaaccttttcgattttttgtcttacctcggtccctttgagtactttgttcataaagtatacctagtgttgggtttcatcgtccttcctggttaggacaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27923129 |
gcaaccttttcgattttttgtcttacctcggtccctttgagtactttgttcataaagtatacctagtgttgggtttcatcgtcctccctggttaggacaa |
27923030 |
T |
|
| Q |
311 |
cactggcttccttttttgaaacaactatataaacaaattgtttctctatggggtccagtcttgaaattatcgggagttgagattgaa----ctttaacca |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
27923029 |
cactggcttccttttttgaaacaactatataaacaaattgtttctctatggggtccagtcttgaaattatcgggggttgagattgaactttctttaacca |
27922930 |
T |
|
| Q |
407 |
agagaatgtggtctcacactcgtc-ttccgcttgaagcgcgtctcctttcgtaagaaacaatagaatggtagggtgtaatgtgtcgggttaaagatgaaa |
505 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27922929 |
agagaatgtggtctcacactcgtcggtccgcttgaagtgcgtctcctttcgtaagaaacaatagaatggtagggtgtaatgtgtcgggttaaagatgaaa |
27922830 |
T |
|
| Q |
506 |
catgcatgtgagaaagttgtgatcactccattgactgtttggagtctcttctttccggtgggatgtccatggtgatgtttgctcaacacttatcagggct |
605 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
27922829 |
----catgtgagagagttgtgatcactccattgactgtttggagtctcttctttccggtgggatgtccatggtgatgtttgttcgacacttatcagggct |
27922734 |
T |
|
| Q |
606 |
tgcttctactccctccttggtgatatagaacccccnnnnnnntttccctcttagaccttgaaggtatgcatttttctgagttaagtcgcatattgtgctt |
705 |
Q |
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| T |
27922733 |
tgcttctactccctgcttggtgatatagaaccccc-aaattttttccctcttagaccttgaaggtatgcatttttctgagttaagtcgcatattgtgctt |
27922635 |
T |
|
| Q |
706 |
gcgcacttcaaaaaacactaaatataggtgtccgatgtagtctgttttttctccaaatgtaaaaatcatatcatccatgtacacagcaagcatatctgag |
805 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27922634 |
gcgcacttcaaaaaacactaaatataggtgtccgatgtagtctgttttttctccaaatgtaaaaatcatatcatccatgtacaccacaagcatatctgag |
27922535 |
T |
|
| Q |
806 |
atttgatttctagctttaatttttatgaatcatgcaaggctttgaagagtggatttaaaatgttttgatttatcacaagcctatggata |
894 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27922534 |
atttgatttctagctttcatttttatgaatcatgcaaggctttgaagagtggatttaaaatgttttgatttatcacaagcctatggata |
27922446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 825 - 901
Target Start/End: Original strand, 53632231 - 53632307
Alignment:
| Q |
825 |
tttttatgaatcatgcaaggctttgaagagtggatttaaaatgttttgatttatcacaagcctatggatacatgatg |
901 |
Q |
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|||| |||| ||||||||| |||| || ||| ||||||||||||||||||| |||| || |||| ||||||||||| |
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| T |
53632231 |
ttttcatgactcatgcaagcctttaaaaagttgatttaaaatgttttgattcatcataaacctaatgatacatgatg |
53632307 |
T |
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