View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8350_low_10 (Length: 402)
Name: NF8350_low_10
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8350_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 152 - 362
Target Start/End: Original strand, 32561715 - 32561921
Alignment:
| Q |
152 |
attgtccatcaaataactgagaatattgactttctttttcaatttcttattttagttatatcagctaggtaactgaacaattatannnnnnnnnnnnnng |
251 |
Q |
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| T |
32561715 |
attgtccatcaaataactga--atattgactttctttttcgatttcttattttagttatatcagctaggtaactgaacaattatatttttatttttt--g |
32561810 |
T |
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| Q |
252 |
aaattttgaggtgtaaatcacgtattttgtcaataaaataaagaaagacgttgaacaacatttgatcacaagtttttgaatcacaaagccaatcatatat |
351 |
Q |
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| T |
32561811 |
aaattttgaggtgtaaatcacgtattttgtcaataaaataaagaaagacgttgaacaacatttgatcacaagcttttgaatcacaaagccaatcatatat |
32561910 |
T |
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| Q |
352 |
acattggtcat |
362 |
Q |
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| T |
32561911 |
acattggtcat |
32561921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 32561613 - 32561654
Alignment:
| Q |
48 |
aaaacgattaagcaacagaaacagggagatggtattaccact |
89 |
Q |
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| T |
32561613 |
aaaaccattaagtaacagaaatagggagatggtattaccact |
32561654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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