View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8350_low_11 (Length: 398)
Name: NF8350_low_11
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8350_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 177 - 379
Target Start/End: Original strand, 47626232 - 47626435
Alignment:
| Q |
177 |
cctactgaaccttcaattttgtggttgtaattagtttggctaatgaatccaacaccaaattaacatcatccactgcaaaacaatnnnnnnnnn-taagca |
275 |
Q |
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| T |
47626232 |
cctactgaaccttcaattttgtggttgtaattagtttggctaatgaatccaacaccaaattaacatcatccactgcaaaacaatataaaaaaaataagca |
47626331 |
T |
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| Q |
276 |
ttgcataaaatcgaatcacaaagttaagaaaatagagaaaattgttacctcgaagctcagaaacaatggagggatgataaatcatgaatcccaaacattt |
375 |
Q |
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| T |
47626332 |
ttgcataaaatcgaatcacaaagttaagaaaatagcgaaaattgttacctcgaagctcagaaacaatggagggatgataaatcatgaatcccaaacattt |
47626431 |
T |
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| Q |
376 |
caag |
379 |
Q |
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|||| |
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| T |
47626432 |
caag |
47626435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 47626070 - 47626162
Alignment:
| Q |
15 |
agagtgaaagtgagcaacaagaaacgatacacctaactgttgtacagaaaagcaccacacccctaaattacaaacagtctgcaacaatagtat |
107 |
Q |
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| T |
47626070 |
agagtgaaagtgagcaacaagaaacgatacacctaactgttgtacagaaaagcaccacacccctaaattacaaacagtctgcaacaatagtat |
47626162 |
T |
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