View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8350_low_12 (Length: 398)
Name: NF8350_low_12
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8350_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 386
Target Start/End: Original strand, 13232179 - 13232550
Alignment:
| Q |
17 |
atgttggatgcggacacgacactgatacatgtggttatatttagttattctattttgtcaaattatttataatgtcgacgtgtcaatgtcgtgtccatgt |
116 |
Q |
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| T |
13232179 |
atgttggatgcggacacgacactgatacacgtggttatatttagttattctattttgtcaaattattcataatgtcgacgtgttagtgtcgtgtccatgt |
13232278 |
T |
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| Q |
117 |
ttgtataagtaattcataggtgactgatttataacaaaattttagaacatgatcatcttttttggacaaaagatgtatatggcactttatttctttgcat |
216 |
Q |
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| T |
13232279 |
ctgtgtaagtaattcataggtgattgatttataacaaaattttagaacatgatcatcttttttggacaaaagatgtatatgacactttatttctttgcat |
13232378 |
T |
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| Q |
217 |
aaaa-tttctaagatgaaatgataaactatacaattatacaatcaatccttccatctaatatcaaaaagctaaa-cagatataatcaattaaggtctttc |
314 |
Q |
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| T |
13232379 |
aaaattttctaagatgaaatgataaactatagaattatacaatcaatccttccatctaatatcaaaaagctaaaccagatataatcaattaaggtctttc |
13232478 |
T |
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| Q |
315 |
aacctctagttgatcatcatcattnnnnnnnnnnnnngttttagtattaatcattatgttcattttgatgtc |
386 |
Q |
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| T |
13232479 |
aacctctagttgatcatcatcattaaaaaattgaaaagttttagtattaatcattatggtcattttgatgtc |
13232550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 13231944 - 13232036
Alignment:
| Q |
18 |
tgttggatgcggacacgacactgatacatgtggttatatttagttattctattttgtcaaattatttataatgtcgacgtgtcaatgtcgtgt |
110 |
Q |
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| T |
13231944 |
tgttggatgctgacacgacattgacacatgtggttacatttatttaatctattttgtcaaattattcatattgttgatgtgtcagcgtcgtgt |
13232036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 24875784 - 24875735
Alignment:
| Q |
32 |
acgacactgatacatgtggttatatttagttattctattttgtcaaatta |
81 |
Q |
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| T |
24875784 |
acgacactgatacatgtggttacattcaattattctattttctcaaatta |
24875735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 35990525 - 35990575
Alignment:
| Q |
33 |
cgacactgatacatgtggttatatttagttattctattttgtcaaattatt |
83 |
Q |
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| T |
35990525 |
cgacactgacacatgtggttacattcagttattttattttctcaaattatt |
35990575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 21011795 - 21011755
Alignment:
| Q |
41 |
atacatgtggttatatttagttattctattttgtcaaatta |
81 |
Q |
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| T |
21011795 |
atacatgtggttatattgaattattctattttctcaaatta |
21011755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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