View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8350_low_13 (Length: 382)
Name: NF8350_low_13
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8350_low_13 |
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| [»] chr3 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 382
Target Start/End: Original strand, 36470203 - 36470569
Alignment:
| Q |
16 |
acatcaagcctcagactaacagagtgcgggctctaatacaagtccaaacaagttactctacagcaatacaagtaactctaattgacatctgacttgttca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36470203 |
acatcaagcctcagactaacagagtgcgggctctaatacaagtccaaacaagttactctacagcaatacaagtaactctaattgacatctgacttgttca |
36470302 |
T |
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| Q |
116 |
agttcaaaaaattatctgcagcagtaaaaatgaaatgctctacacatgaacaaaaccactttaatatgatttaaactcgatttgtttgctaagctcagca |
215 |
Q |
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| T |
36470303 |
agttcaaaaaattatctgcagcagtaaaaatgaaatgctctacacatgaacaaaaccactttaatatgatttaaactcgatttgtttgctaagctcagca |
36470402 |
T |
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| Q |
216 |
agaaggaccgagtccaagataataggtggcttgcaagccaaaagcgctattggcctattgctgatgatgaatcttcaacacatgttgtgcaaccgctatt |
315 |
Q |
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| T |
36470403 |
agaaggaccgagtccaagataataggtggcttgcaagccaaaagcgctattggcctattgctgatgatgaatcttcaacacatgttgtgcaaccgctatt |
36470502 |
T |
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| Q |
316 |
tctgatggcagctcgctggccaaaagtgtcgcgttgtacccaaccactgctagtcgctaccatactc |
382 |
Q |
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| T |
36470503 |
gctgatggcagctcgctggccaaaagtgtcgcgttgtacccaaccactgctagtcgctaccatactc |
36470569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 39700147 - 39700108
Alignment:
| Q |
202 |
tgctaagctcagcaagaaggaccgagtccaagataatagg |
241 |
Q |
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| T |
39700147 |
tgctaagctcagcaagaagaaccaagtccaagataatagg |
39700108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 382
Target Start/End: Complemental strand, 21188658 - 21188300
Alignment:
| Q |
16 |
acatcaagcctcagactaacagagtgcgggctctaatacaagtccaaacaagttactctacagcaatacaagtaactctaattgacatctgacttgttca |
115 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||| |
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| T |
21188658 |
acatcaagcctcggactaacagagtgcaggctctaatacaagtccaaacaagttactctacagcaacacaagtaactctaactgacatctgacttcttca |
21188559 |
T |
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| Q |
116 |
agttcaaaaaattatctgcagcagtaaaaatgaaatgctctacacatgaacaaaaccactttaatatgatttaaactcgatttgtttgctaagctcagca |
215 |
Q |
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| T |
21188558 |
agttcaaacaattatctgcagcagtaaaaatgaaatgctctatacatgaacaaaaccacttgaatatgatttaaactcgatttgtttgctaagctcagca |
21188459 |
T |
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| Q |
216 |
agaaggaccgagtccaagataataggtggcttgcaagccaaaagcgctattggcctattgctgatgatgaatcttcaacacatgttgtgcaaccgctatt |
315 |
Q |
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| T |
21188458 |
agaaggacagagtccaagataataggcgccctgcaagccaaaagcgct--------attgctgatgatgaatcttcaacacatgttgtgcaaccgcgatt |
21188367 |
T |
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| Q |
316 |
tctgatggcagctcgctggccaaaagtgtcgcgttgtacccaaccactgctagtcgctaccatactc |
382 |
Q |
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| T |
21188366 |
gctgatggcggctcgctggccaaaagtgtcgcgttgtacccaaccactgctagtcgctaccatactc |
21188300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 13606451 - 13606406
Alignment:
| Q |
131 |
ctgcagcagtaaaaatgaaatgctctacacatgaacaaaaccactt |
176 |
Q |
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| T |
13606451 |
ctgcagcagtaaaaatgaaatgctctatacatgaacaaaaccactt |
13606406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 13607465 - 13607409
Alignment:
| Q |
77 |
agcaatacaagtaactctaattgacatctgacttgttcaagttcaaaaaattatctg |
133 |
Q |
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| T |
13607465 |
agcaacacaagtaactctaattgacatctggtttcttcaagttcaaacaattatctg |
13607409 |
T |
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