View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8350_low_15 (Length: 350)
Name: NF8350_low_15
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8350_low_15 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 22 - 335
Target Start/End: Original strand, 14786474 - 14786787
Alignment:
| Q |
22 |
actacacagatgaagcgaacttcttcgttagtatctagttgtaatgctattgtacgacagcgccaacaaaatgcagagatgatttcaaagttggtgtgtt |
121 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
14786474 |
actacgcagatgaaacgaacttcttcgttagtatctagttgtaatgctattgtacgacaacgccaacaaaatgcagagatgatttcaaagtcggtgtgtt |
14786573 |
T |
|
| Q |
122 |
gttgtagtggatgaaccggaaggagagaacgaattgcagctacctcggtgggaccaaagaagaaagtgtgatgaaccatgtcgtctaagggaatgacggt |
221 |
Q |
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| T |
14786574 |
gttgtagtggatgaaccggaaggagagaacgaattgcagctacctcggtgggaccaaagaagaaagtgtgatgaaccatgtcgtctaagggaatgaccgt |
14786673 |
T |
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| Q |
222 |
tcatttgtttcgtggtacttcttcatattcgtgatgagtacacgtaattcttggtgggttccttgcatttagaagctctctacaccacaccggtgagatt |
321 |
Q |
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| T |
14786674 |
tcctttgtttcgtggtacttcttcatattcgtgatgagtacacgtaattcttggtgggttccttgcatttagaagctctctacaccacaccggtgagatt |
14786773 |
T |
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| Q |
322 |
gaaggttcgttcat |
335 |
Q |
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| T |
14786774 |
gaaggttcgttcat |
14786787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 36 - 328
Target Start/End: Complemental strand, 14759397 - 14759105
Alignment:
| Q |
36 |
gcgaacttcttcgttagtatctagttgtaatgctattgtacgacagcgccaacaaaatgcagagatgatttcaaagttggtgtgttgttgtagtggatga |
135 |
Q |
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| T |
14759397 |
gcgaacttcttcgttagaatctagttgtaatgctattgtacgacaacgccaaaagtatgcggctatgacttcaaaattggagtatttttgcaattggtga |
14759298 |
T |
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| Q |
136 |
accggaaggagagaacgaattgcagctacctcggtgggaccaaagaagaaagtgtgatgaaccatgtcgtctaagggaatgacggttcatttgtt-tcgt |
234 |
Q |
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| T |
14759297 |
gtcggaaggagagagcgaattgcagctacctcggtcggaccaatgaagaaagtgcggtgaaccatgtcgtctaagggaaacatggttcctttgttgtcg- |
14759199 |
T |
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| Q |
235 |
ggtacttcttcatattcgtgatgagtacacgtaattcttggtgggttccttgcatttagaagctctctacaccacaccggtgagattgaaggtt |
328 |
Q |
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| T |
14759198 |
ggttctggatcgtattcacgatgagtacatgtcactattggtggatcccttgcattaagaagctctctgctccacactggtgagattgaaggtt |
14759105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 36 - 328
Target Start/End: Original strand, 14878343 - 14878634
Alignment:
| Q |
36 |
gcgaacttcttcgttagtatctagttgtaatgctattgtacgacagcgccaacaaaatgcagagatgatttcaaagttggtgtgttgttgtagtggatga |
135 |
Q |
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| T |
14878343 |
gcgaacttcttcgttagaatctagttgaaatgctattgtacgacaac-ccaaaagtatgcggctatgatttcaaaattggagtattgttgcatttggtta |
14878441 |
T |
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| Q |
136 |
accggaaggagagaacgaattgcagctacctcggtgggaccaaagaagaaagtgtgatgaaccatgtcgtctaagggaatgacggttcatttgtt-tcgt |
234 |
Q |
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| T |
14878442 |
ggtggaaggagagtgcgaattgcagctacctcggtcggaccaatgaagaaagtgcggtgaaccatgtcgtctaagggaaacatggttcctttgttgtcg- |
14878540 |
T |
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| Q |
235 |
ggtacttcttcatattcgtgatgagtacacgtaattcttggtgggttccttgcatttagaagctctctacaccacaccggtgagattgaaggtt |
328 |
Q |
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| T |
14878541 |
ggttctggatcgtattcacgatgattatatgtcactcttggtggatcccttgcattaagaagctctctgctccacaccggtgagattgaaggtt |
14878634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 336
Target Start/End: Original strand, 14873682 - 14873780
Alignment:
| Q |
238 |
acttcttcatattcgtgatgagtacacgtaattcttggtgggttccttgcatttagaagctctctacaccacaccggtgagattgaaggttcgttcatc |
336 |
Q |
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|||| ||||||||| |||||||| || || | ||||||||| | |||||| ||||||||||||||| ||| || |||||||||||||||| ||||||| |
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| T |
14873682 |
acttgttcatattcatgatgagtgcatgttactcttggtggatcccttgcgtttagaagctctctatgccatactggtgagattgaaggtttgttcatc |
14873780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 36 - 328
Target Start/End: Original strand, 84403 - 84695
Alignment:
| Q |
36 |
gcgaacttcttcgttagtatctagttgtaatgctattgtacgacagcgccaacaaaatgcagagatgatttcaaagttggtgtgttgttgtagtggatga |
135 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| ||||||||| |||||| || ||| | |||||||||||| |||| || || |||| || | ||| |
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| T |
84403 |
gcgaacttcttcgttagtatctagttgtaacgctagtgtacgacaacgccaaaaatatgatgtgatgatttcaaaattggagtatttttgttgttgttga |
84502 |
T |
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| Q |
136 |
accggaaggagagaacgaattgcagctacctcggtgggaccaaagaagaaagtgtgatgaaccatgtcgtctaagggaatgacggttcatttgtttcgtg |
235 |
Q |
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||||| |||||||||||||| ||||||||||| | |||||||||||||| || || |||||||| ||||||| || | || |||||| | |
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| T |
84503 |
ggtggaagtagagaacgaattgcggctacctcggttgcaccaaagaagaaagcatggtggaccatgtcatctaaggaaaatgtgtttgctttgttgtcag |
84602 |
T |
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| Q |
236 |
gtacttcttcatattcgtgatgagtacacgtaattcttggtgggttccttgcatttagaagctctctacaccacaccggtgagattgaaggtt |
328 |
Q |
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| T |
84603 |
gttctggttcgtattcacgatgagtacacgtcactcttggtgcatcccttgcgcttagaatttctctgcaccacactggtgagattgaaggtt |
84695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 11999971 - 12000161
Alignment:
| Q |
20 |
tgactacacagatgaagcgaacttcttcgttagtatctagttgtaatgctattgtacgacagcgccaacaaaatgcagagatgatttcaaagttggtgtg |
119 |
Q |
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|||| |||||||| | | ||| |||||||| | ||| |||||||||||||||||||||| | |||||| || |||| |||||||||||||| | | || |
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| T |
11999971 |
tgacaacacagattatgtgaatttcttcgtcaatatttagttgtaatgctattgtacgataacgccaaaaatatgcggagatgatttcaaaataagaatg |
12000070 |
T |
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| Q |
120 |
ttgttgtagtggatgaaccggaaggagagaacgaattgcagctacctcggtgggaccaaagaagaaagtgtgatgaaccatgtcgtctaag |
210 |
Q |
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| T |
12000071 |
tggttgtagttggtgaggaggaaggagagtacgaattggcgccacctcggtgggaccaaagaagaaagtgcggtgcatcatgtcatctaag |
12000161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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