View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8350_low_19 (Length: 315)

Name: NF8350_low_19
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8350_low_19
NF8350_low_19
[»] chr2 (5 HSPs)
chr2 (11-184)||(9033998-9034171)
chr2 (140-185)||(1173854-1173899)
chr2 (137-184)||(11873275-11873322)
chr2 (145-179)||(41735852-41735886)
chr2 (140-176)||(32149145-32149181)
[»] chr7 (4 HSPs)
chr7 (183-295)||(47017856-47017968)
chr7 (73-171)||(936443-936543)
chr7 (135-177)||(3484817-3484859)
chr7 (135-176)||(3483961-3484002)
[»] scaffold0427 (1 HSPs)
scaffold0427 (140-184)||(6868-6912)
[»] chr3 (2 HSPs)
chr3 (140-184)||(4297055-4297099)
chr3 (135-177)||(32568222-32568264)
[»] chr1 (4 HSPs)
chr1 (140-184)||(6815255-6815299)
chr1 (145-184)||(18972310-18972349)
chr1 (135-184)||(1670200-1670249)
chr1 (142-176)||(25421550-25421584)
[»] chr8 (2 HSPs)
chr8 (135-176)||(28224204-28224245)
chr8 (135-177)||(28225038-28225080)
[»] chr4 (3 HSPs)
chr4 (135-176)||(12846027-12846068)
chr4 (135-176)||(44123564-44123605)
chr4 (142-177)||(44122671-44122706)
[»] chr5 (3 HSPs)
chr5 (145-179)||(22369639-22369673)
chr5 (140-181)||(3385248-3385289)
chr5 (135-184)||(20164171-20164220)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 9034171 - 9033998
Alignment:
Q  11 gagatgaaggaggaggtacagtaacatagagaataaagaaggatcttaaactattaagatgagttcaggtgtgtcaagtgcatcataaatactcataggt 110  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  9034171 gagatgaaggaggaggtacagtaacatagagaataaagtaggatcttaaactattgagatgagttcaggtgtgtcaagtgcatcatagatactcataggt 9034072  T
Q  111 catcaacatccatccattaaagtaactctctcacggtgggagacctatcaagctctcccaccctagactgagcc 184  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9034071 catcaacatccatccattaaagtaactctctcacagtgggagacctatcaagctctcccaccctagactgagcc 9033998  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 1173899 - 1173854
Alignment:
Q  140 ctcacggtgggagacctatcaagctctcccaccctagactgagccg 185  Q
    |||||||||||||||||||||||||||||||||||||  |||||||    
T  1173899 ctcacggtgggagacctatcaagctctcccaccctagcatgagccg 1173854  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 11873322 - 11873275
Alignment:
Q  137 tctctcacggtgggagacctatcaagctctcccaccctagactgagcc 184  Q
    ||||||||||| |||||||||||||| ||||||||||||||| |||||    
T  11873322 tctctcacggtaggagacctatcaaggtctcccaccctagacggagcc 11873275  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 179
Target Start/End: Original strand, 41735852 - 41735886
Alignment:
Q  145 ggtgggagacctatcaagctctcccaccctagact 179  Q
    |||| ||||||||||||||||||||||||||||||    
T  41735852 ggtgagagacctatcaagctctcccaccctagact 41735886  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 32149181 - 32149145
Alignment:
Q  140 ctcacggtgggagacctatcaagctctcccaccctag 176  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  32149181 ctcacgatgggagacctatcaagctctcccacactag 32149145  T

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Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 183 - 295
Target Start/End: Complemental strand, 47017968 - 47017856
Alignment:
Q  183 ccgagtaaaaaacgaagaacatagtttaacctattgtttactattcacatgtttgaatgctattttattagttctcaataatgctctgagtatgctcttt 282  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  47017968 ccgagtaaaaaacgaaaaacatagtttaacctattgtttactattcacatgtttgaatgctattttattagttctcaataatcctctgagtatgctcttt 47017869  T
Q  283 ggagggactgcct 295  Q
    |||||||||||||    
T  47017868 ggagggactgcct 47017856  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 73 - 171
Target Start/End: Original strand, 936443 - 936543
Alignment:
Q  73 gttcaggtgtgtcaagtgcatcataaatactcataggtcatcaacatccatccattaaagtaactctctcacggt--gggagacctatcaagctctccca 170  Q
    |||||||||| |||||||||||||||| |||||| || ||||||||||||||| ||||||  |||||| ||||||  ||||||||||| |||||||||||    
T  936443 gttcaggtgtatcaagtgcatcataaacactcatgggacatcaacatccatccgttaaagctactctcccacggtgggggagacctatgaagctctccca 936542  T
Q  171 c 171  Q
    |    
T  936543 c 936543  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 3484817 - 3484859
Alignment:
Q  135 actctctcacggtgggagacctatcaagctctcccaccctaga 177  Q
    |||||||||||||||||||| ||| ||||||||||| ||||||    
T  3484817 actctctcacggtgggagacttattaagctctcccatcctaga 3484859  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 3484002 - 3483961
Alignment:
Q  135 actctctcacggtgggagacctatcaagctctcccaccctag 176  Q
    |||||| ||||| | |||||||||||||||||||||||||||    
T  3484002 actctcccacggggagagacctatcaagctctcccaccctag 3483961  T

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Target: scaffold0427 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 6912 - 6868
Alignment:
Q  140 ctcacggtgggagacctatcaagctctcccaccctagactgagcc 184  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  6912 ctcacggtgggagacctatcaaactctcccaccctagactgagcc 6868  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 4297055 - 4297099
Alignment:
Q  140 ctcacggtgggagacctatcaagctctcccaccctagactgagcc 184  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  4297055 ctcacggtgggagacctatcaaactctcccaccctagactgagcc 4297099  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 32568222 - 32568264
Alignment:
Q  135 actctctcacggtgggagacctatcaagctctcccaccctaga 177  Q
    |||||||||| ||||||||||||| ||||||||||||||||||    
T  32568222 actctctcacagtgggagacctattaagctctcccaccctaga 32568264  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 6815299 - 6815255
Alignment:
Q  140 ctcacggtgggagacctatcaagctctcccaccctagactgagcc 184  Q
    |||||||| |||||||||||||| |||||||||||||||||||||    
T  6815299 ctcacggtaggagacctatcaaggtctcccaccctagactgagcc 6815255  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 184
Target Start/End: Original strand, 18972310 - 18972349
Alignment:
Q  145 ggtgggagacctatcaagctctcccaccctagactgagcc 184  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  18972310 ggtgggagacctatcaagctcttccaccctagactgagcc 18972349  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 1670249 - 1670200
Alignment:
Q  135 actctctcacggtgggagacctatcaagctctcccaccctagactgagcc 184  Q
    |||| |||||||| |||||||||||||| ||||||||| |||||||||||    
T  1670249 actcactcacggtaggagacctatcaaggtctcccaccttagactgagcc 1670200  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 176
Target Start/End: Complemental strand, 25421584 - 25421550
Alignment:
Q  142 cacggtgggagacctatcaagctctcccaccctag 176  Q
    |||||| ||||||||||||||||||||||||||||    
T  25421584 cacggtaggagacctatcaagctctcccaccctag 25421550  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 28224245 - 28224204
Alignment:
Q  135 actctctcacggtgggagacctatcaagctctcccaccctag 176  Q
    |||||| |||||||| ||||||||||||||||||||||||||    
T  28224245 actctcccacggtggaagacctatcaagctctcccaccctag 28224204  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 28225038 - 28225080
Alignment:
Q  135 actctctcacggtgggagacctatcaagctctcccaccctaga 177  Q
    |||| ||||||||| ||||||||| ||||||||||||||||||    
T  28225038 actcactcacggtgagagacctattaagctctcccaccctaga 28225080  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 12846068 - 12846027
Alignment:
Q  135 actctctcacggtgggagacctatcaagctctcccaccctag 176  Q
    |||||| ||||||| |||||||||||||||||||||||||||    
T  12846068 actctcccacggtgagagacctatcaagctctcccaccctag 12846027  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 44123564 - 44123605
Alignment:
Q  135 actctctcacggtgggagacctatcaagctctcccaccctag 176  Q
    |||||| ||||||| |||||||||||||||||||||||||||    
T  44123564 actctcccacggtgagagacctatcaagctctcccaccctag 44123605  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 177
Target Start/End: Complemental strand, 44122706 - 44122671
Alignment:
Q  142 cacggtgggagacctatcaagctctcccaccctaga 177  Q
    ||||||||||||||||| ||||||||||||||||||    
T  44122706 cacggtgggagacctattaagctctcccaccctaga 44122671  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 179
Target Start/End: Complemental strand, 22369673 - 22369639
Alignment:
Q  145 ggtgggagacctatcaagctctcccaccctagact 179  Q
    |||| ||||||||||||||||||||||||||||||    
T  22369673 ggtgagagacctatcaagctctcccaccctagact 22369639  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 3385289 - 3385248
Alignment:
Q  140 ctcacggtgggagacctatcaagctctcccaccctagactga 181  Q
    |||| ||||| ||||||||||| |||||||||||||||||||    
T  3385289 ctcatggtggaagacctatcaaactctcccaccctagactga 3385248  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 20164171 - 20164220
Alignment:
Q  135 actctctcacggtgggagacctatcaagctctcccaccctagactgagcc 184  Q
    |||| |||||| |||||||||||||||||||||||| | |||| ||||||    
T  20164171 actcactcacgatgggagacctatcaagctctcccatcgtagattgagcc 20164220  T

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