View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8350_low_22 (Length: 305)
Name: NF8350_low_22
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8350_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 8194644 - 8194938
Alignment:
| Q |
1 |
atcaataaaagtaacaaaatattgataacccaaacatgaaacaacacggctaggaccccaaatatcagaatgaactaaagcaaaaggagacgcagctctt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8194644 |
atcaataaaagtaacaaaatattgataacccaaacatgaaacaacacggctaggaccccaaatatcagaatgaactaaagcaaaaggagacgcagctctt |
8194743 |
T |
|
| Q |
101 |
ttattgactctatcgggaaagaaactcctagtatgtttcccgaactgacacgactcacactctaaggtagacacttttgacagatttggaaccataagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8194744 |
ttattgactctatcgggaaagaaactcctagtatgtttcccgaactgacacgactcacactctaaggtagacacttttgacagatttggaaccataagat |
8194843 |
T |
|
| Q |
201 |
gcagcttctgaaggcttggatggcctgaacgccggaggatcaagacatgttacgacgtttgggtgaaggcaaagaagacatactctaatgatgtc |
295 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8194844 |
gcagcttctgaaggcttggatggcctaaacgccggaggatcaagacatgttacgacgttttggtgaaggcaaagaagacatactctaatgatgtc |
8194938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 21501180 - 21501114
Alignment:
| Q |
1 |
atcaataaaagtaacaaaatattgataacccaaacatgaaacaacacggctaggaccccaaatatca |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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|
| T |
21501180 |
atcaataaaagtaacaaaatattgataacccaaacatgcaacaacacgactaggaccccaaatatca |
21501114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 6575277 - 6575309
Alignment:
| Q |
43 |
aacacggctaggaccccaaatatcagaatgaac |
75 |
Q |
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|||||| |||||||||||||||||||||||||| |
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|
| T |
6575277 |
aacacgactaggaccccaaatatcagaatgaac |
6575309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 22162964 - 22163193
Alignment:
| Q |
1 |
atcaataaaagtaacaaaatattgataacccaaacatgaaacaacacggctaggaccccaaatatcagaatgaactaaagcaaaaggagacgcagctctt |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
22162964 |
atcaataaaagtaacaaa-tattgataacccaaacatgaaacaacacggctagaaccccaaatatcagaatgaactaaagcaaaaggaaacgcaactctt |
22163062 |
T |
|
| Q |
101 |
ttattgactctatcgggaaagaaactcctagtatgtttcccgaactgacacgactcacactctaaggtagacacttttgacagatttggaaccataagat |
200 |
Q |
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|
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22163063 |
ttattgactctatcgggaaagaaactcctattatttttcccgaactgacacgactcacactctaaggtagacacttttgacagatttggaaccataagat |
22163162 |
T |
|
| Q |
201 |
gcagcttctgaaggcttggatggcctgaacg |
231 |
Q |
| |
|
||||||||| |||||||||||||||| |||| |
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|
| T |
22163163 |
gcagcttctaaaggcttggatggcctaaacg |
22163193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 295
Target Start/End: Complemental strand, 22164300 - 22164249
Alignment:
| Q |
244 |
gacatgttacgacgtttgggtgaaggcaaagaagacatactctaatgatgtc |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
22164300 |
gacatgttacgacgtttgggtgaaggcaaagaagacacactctaatgatgtc |
22164249 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 27821936 - 27822082
Alignment:
| Q |
1 |
atcaataaaagtaacaaaatattgataacccaaacatgaaacaacacggctaggaccccaaatatcagaatgaactaaagcaaaaggagacgcagctctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
27821936 |
atcaataaaagtaacaaaatattgataacccaaacatgaaacaacacgactaggaccccaaatatcaaaatgaactaaagcaaaaggagacacagctctt |
27822035 |
T |
|
| Q |
101 |
ttattgactctatcgggaaagaaactcctagtatgtttcccgaactg |
147 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
27822036 |
ttattgactctaccgggaaagaaactcctagtatgtttcccgaactg |
27822082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 41491166 - 41491255
Alignment:
| Q |
64 |
atcagaatgaactaaagcaaaaggagacgcagctcttttattgactctatcgggaaagaaactcctagtatgtttcccgaactgacacga |
153 |
Q |
| |
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||||||||| | |||||||||||| |||| |||| ||||||||||| ||||||||| ||| | ||| |||||||| ||||||||||| |
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| T |
41491166 |
atcagaatggaataaagcaaaaggggacgatgctcgtttattgactcgatcgggaaaatgactacgagtgtgtttccctaactgacacga |
41491255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 6961188 - 6961087
Alignment:
| Q |
101 |
ttattgactctatcgggaaagaaactcctagtatgtttcccgaactgacacgactcacactctaaggtagacacttttgacagatttggaaccataagat |
200 |
Q |
| |
|
||||||||||||||| |||| || |||| |||||||| ||||||||| | |||||||||| |||||||||||||||||| ||| | ||||||||||||| |
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| T |
6961188 |
ttattgactctatcgcaaaaggaattcctcgtatgttttccgaactgatatgactcacactttaaggtagacacttttgagagactcggaaccataagat |
6961089 |
T |
|
| Q |
201 |
gc |
202 |
Q |
| |
|
|| |
|
|
| T |
6961088 |
gc |
6961087 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 12895518 - 12895450
Alignment:
| Q |
42 |
caacacggctaggaccccaaatatcagaatgaactaaagcaaaaggagacgcagctcttttattgactc |
110 |
Q |
| |
|
||||||| ||||||||||||| ||| |||||||||||||||||||| || ||| | |||||||| |||| |
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|
| T |
12895518 |
caacacgactaggaccccaaacatctgaatgaactaaagcaaaaggtgatgcaacacttttatttactc |
12895450 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 159
Target Start/End: Complemental strand, 55253767 - 55253672
Alignment:
| Q |
64 |
atcagaatgaactaaagcaaaaggagacgcagctcttttattgactctatcgggaaagaaactcctagtatgtttcccgaactgacacgactcaca |
159 |
Q |
| |
|
||||||||| |||||||||||||| | || |||| ||||||||||| ||||||||| ||| | ||| |||||||| ||||||||| ||||||| |
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|
| T |
55253767 |
atcagaatggactaaagcaaaaggggccgatgctcgtttattgactcgatcgggaaaatgactacgagtgtgtttccctaactgacactactcaca |
55253672 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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